Shewanella japonica: SJ2017_3973
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Entry
SJ2017_3973 CDS
T04959
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
sja
Shewanella japonica
Pathway
sja03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SJ2017_3973
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sja03021
]
SJ2017_3973
03400 DNA repair and recombination proteins [BR:
sja03400
]
SJ2017_3973
Enzymes [BR:
sja01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SJ2017_3973
Transcription machinery [BR:
sja03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SJ2017_3973
DNA repair and recombination proteins [BR:
sja03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SJ2017_3973
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
DUF7960
Motif
Other DBs
NCBI-ProteinID:
ARD24202
UniProt:
A0ABM6JRH0
LinkDB
All DBs
Position
complement(4733756..4734745)
Genome browser
AA seq
329 aa
AA seq
DB search
MQGSVTEFLKPRLVDIEQVNPTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSSKEGVQEDILEILLNLKGLAVNIEGKDEALLTLSKSGTGPVTAADITHDGD
VTIMNPDHVICHLTGNNDISMRIRVERGRGYVPASARAQTEDDDRPIGRLLVDASFSPVA
RIAYNVEAARVEQRTDLDKLVIDMTTNGTIDPEEAIRRSATILAEQLDAFVELRDVTETA
VVEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLENWPPASLADDL
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgttacagaatttcttaaaccgcgtctcgttgacatagagcaggttaac
ccaactcgtgccaaggttacgctagagccactagaacgtggttttggtcacacattaggc
aacgcgttgcgtcgaatcttattgtcgtctatgcctggctgtgcagttacagaagtcgaa
atcgacggtgtattgcatgaatacagcagtaaggaaggcgttcaagaagatatcctagag
atattgcttaaccttaaaggtctagcagtaaacatcgagggtaaagatgaagctttactt
acgttaagtaagtcaggcacaggccctgttactgcagcagatatcactcatgatggcgat
gtaaccatcatgaatcctgatcatgttatctgtcatttgactggtaacaatgatatcagc
atgcgtatccgcgttgagcgtggtcgtggttatgtaccagcttcggctcgtgcacaaact
gaagacgatgatcgcccaatcggtcgtttgttggttgatgcttcattctcacctgttgct
cgcattgcttacaatgttgaagcagcacgtgttgaacaacgtactgatttggataaactc
gttattgatatgaccactaatggtactatcgatcctgaggaagccattcgtcgttctgca
acaattctagctgaacagttagatgcgtttgttgaattacgtgatgttaccgaaacagcc
gttgtcgaagagaaaccggaatttgatccgattctgttgcgtcctgtcgacgatttagag
ctaactgtacgttcagccaactgtttgaaggctgaagcgattcattacatcggagatctc
gtacagcgcactgaagttgagttgctcaagactcctaatttaggtaagaaatctcttact
gaaattaaggatgtattagcgtctcgcggactatctttaggtatgcgtctagaaaactgg
cctccagctagtttagcagacgacctataa
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