Shewanella japonica: SJ2017_4003
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Entry
SJ2017_4003 CDS
T04959
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sja
Shewanella japonica
Pathway
sja03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SJ2017_4003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sja03021
]
SJ2017_4003
03400 DNA repair and recombination proteins [BR:
sja03400
]
SJ2017_4003
Enzymes [BR:
sja01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SJ2017_4003
Transcription machinery [BR:
sja03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SJ2017_4003
DNA repair and recombination proteins [BR:
sja03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SJ2017_4003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
DUF2267
Motif
Other DBs
NCBI-ProteinID:
ARD24232
LinkDB
All DBs
Position
complement(4751840..4756060)
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEETYLDALEEYGDEFEAKM
GAEAVLDLLRAINLEEQIDQMREELPSINSETRRKKVTKRLKLMEAFFTSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREQAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RSLMMSTNNILSPANGEPVITPSQDVVLGLYYTSRECVNGRGEGMTFMSVDEVEKAYATG
AAELHARVKVRLIETSIDANGEKVQTRKIVDTTVGRALLSQILPEGLPFDLVNQNMGKKQ
ISKLLNTCYRALGLKDTVIFADQLMYTSFRYATISGASVGINDMVIPDEKYTLVEEAERE
VLEIQEQFQSGLVTAGERYNKVIDIWASTNDKISKAMMDNLKKEVVINRDGEEEEQDSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVSQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTEEGLTMKPLIEGGDVKEPLRERVL
GRVVAVDVLEPGTEKVLAPRNTLLDESWCDLLEEHSVDEVIVRSVISCDTDFGVCAACYG
RDLARGHIINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRDSAENNVQVKNNGTLKL
HNAKYVKSIDDKLVIVSRSSEIAVIDELGREKERYRVPYGTVLEQLEDSEVTSGAIIANW
DPHTHPIISEVAGSVKFVDMIEGVTMTRQTDDLTGLSSVVVIDAGARPTAGKEMRPAIRL
IDAAGNDLMIPGTDVPAQYFLPGNAIVSKDDNAQINVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTISFGKETKGKVRLVISPADGGDHYEEMIPKWRNLNVFE
GEKVERGEVIADGPEAAHDILRLRGIHHVANYIVDEVQDVYRLQGVKINDKHIEVIIRQM
LRKCLITDAGDSNFLVGEQAEVSRVKIANRELEAQGKAPAKFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDQLRGLKENVIVGRLIPAGTGYAYHNARNEARANVKDEG
VEAPVITASEAEKNLADLLNLAGSAD
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttcttaaacagcaaagcaagactgaagaatttaacggtatt
aaaattggtttggcttcgccagacctaatccgttcttggtcttttggtgaagttaaaaag
ccagaaaccattaattaccgtactttcaaacctgaacgtgaaggtttgttctgtgcgcgt
attttcggtcctgtaaaagattacgaatgtttgtgtggtaaatacaaacgtttgaagcac
cgtggtgttatttgtgagaagtgtggcgttgaagttacacagactaaagtacgtcgtgag
cgtatgggtcatattgatcttgcaagcccagttgcccatatttggttcttgaaatcactt
ccgagtcgtatcggtttgatgcttgatatgacattacgtgatattgaacgcgtattgtac
tttgagtcatttgtagtgatcgagcctggcatgaccagccttgaacgcggtcaaatgctg
acagaagaaacatatcttgatgcattagaagaatacggtgacgagtttgaagctaaaatg
ggtgctgaagcagtcttagacttgctacgtgcaatcaatttagaagaacaaattgatcaa
atgcgtgaagagttaccatcaattaactctgaaacccgtcgtaagaaggtcactaagcgc
cttaaactgatggaagcattcttcacttctggcaacaagcctgagtggatgatcttaaaa
gtgttaccagttctgccacctgatttacgtcctctagttccactagatggcggacgtttt
gctacatctgatttgaacgacctttaccgtcgtgtaatcaaccgtaacaaccgtcttaag
cgtctattagatctagctgcaccagacattatcgtacgtaacgaaaagcgtatgttacaa
gagtctgtcgatgcactattagataatggtcgtcgtggtcgtgctattaccggttctaac
aagcgtccgcttaaatctttggctgatatgatcaaaggtaagcaaggtcgtttccgtcag
aacttacttggtaagcgtgtagattactctggtcgttcggtaattaccgtaggtccaact
ttacgcctgcatcaatgtggtcttcctaagaagatggcacttgagctattcaaaccattt
atttatggcaagttagaaggtcgtggtcttgctactacgattaaagctgctaagaaaatg
gttgagcgagagcaagctgaagtttgggatgtattagacgaagtgattcgtgaacatcca
gtcatgcttaaccgtgcaccaacacttcatagacttggtattcaagcatttgaaccagtt
cttattgaaggtaaagcaatccaattgcatccattagtatgtgcggcatataacgccgac
ttcgatggtgaccaaatggctgtgcacgtgccgttaacgcttgaagctcaattagaagct
cgttcgttaatgatgtcgaccaacaacattctttctcctgctaacggtgagccagtaatc
acgccttctcaagacgtggtactaggtctttactacaccagccgtgaatgtgttaacggt
cgcggtgaaggcatgacattcatgtctgttgatgaagtagaaaaagcatatgcaacaggt
gcagcagaattgcatgcacgtgtaaaagttcgcttaatcgaaacatcaattgacgctaat
ggcgagaaagtacaaacacgtaagattgtagatactacagttggtcgtgcgttgttatcg
caaatcttacctgaaggattaccatttgatttggtaaaccaaaacatgggtaagaagcaa
atctctaaattgctgaacacttgttaccgtgcattaggtctaaaagatactgttatcttt
gctgaccaattaatgtataccagtttccgttacgcaactatctctggtgcctctgttggt
atcaacgatatggttattccggacgagaaatataccttagttgaagaagctgaacgtgaa
gtgcttgaaattcaagagcagttccaatcaggtcttgtaacagctggtgagcgctacaac
aaagttatcgatatttgggcaagcaccaacgataagatctctaaagcgatgatggacaac
ttgaaaaaagaagttgttattaatcgtgatggtgaagaagaagagcaagattcgtttaac
agcatctatatgatggctgactcgggcgctcgtggtagtgctgcacagattcgtcagtta
gctggtatgcgtggtctgatggctaagccagatggctcaatcatcgaaaccccaattact
gcgaacttccgtgaaggtttgaacgtatcacaatacttcatctctactcacggtgcgcgt
aaaggtcttgccgataccgcactgaaaacagctaactcgggttatctaactcgtcgtctt
gttgacgttgcacaagatttagttgttattgaagatgactgtggaacagaagaaggcttg
accatgaagccgttgattgaaggtggtgatgttaaagagccgcttcgtgaacgtgttcta
ggtcgtgttgtcgctgttgatgtattagaacctggtactgaaaaagtacttgcgccacgt
aacacattactagacgagtcatggtgtgatcttctagaagagcacagtgttgatgaagtt
attgttcgttcagtaatttcttgtgacacagactttggtgtttgtgctgcttgttacggt
cgtgatttagcacgtggtcatattattaaccacggtgaagcgattggtgttgttgctgct
cagtcgattggtgagccaggtacacagcttacgatgcgtactttccacattggtggtgct
gcatctcgtgactctgcagaaaacaacgtacaagttaagaataacggtacattgaaactt
cataacgcgaaatacgttaagagtatcgatgataaactggttatcgtatcgcgttcatct
gaaattgcggttatcgatgagttaggtcgtgagaaagaacgctatcgtgttccttacggt
accgtattagaacaacttgaagattcagaagtaacttctggcgctatcattgctaactgg
gatccacatacgcatcctattatctctgaagttgctggtagtgttaaattcgttgatatg
attgaaggcgttactatgacgcgtcaaacagacgatttaaccggtctatcttctgttgtt
gttattgatgctggtgcacgtcctaccgctggtaaagaaatgcgtcctgctatccgtcta
atcgacgcggcgggtaacgatcttatgatccctggtacagacgtaccagcgcaatacttc
ttaccgggtaatgcgattgtttctaaagacgataatgcgcaaattaatgttggtgatgct
ttagcacgtattcctcaagaatcgtctaaaactcgcgatattaccggtggtctgccacga
gttgctgacttattcgaagcacgtaagcctaaagaacccgctattcttgctgaaatctca
ggtaccatctcgtttggtaaagagactaaaggtaaggttcgtttagttatcagcccagct
gatggcggtgatcattacgaagaaatgatccctaaatggcgtaaccttaacgtgttcgaa
ggtgaaaaagttgaacgtggtgaagttatcgctgacggcccagaagctgcacacgatatc
ctacgtttacgtggtatccatcatgttgctaactatattgttgatgaagtccaagacgtt
taccgtctacagggtgtaaaaatcaatgataagcacattgaggttatcattcgccaaatg
cttcgtaagtgtctaatcactgatgcaggtgattcgaacttcttagtcggtgaacaagct
gaagtatctcgcgtgaagattgctaaccgtgagcttgaagctcaaggtaaagcacctgcg
aagtttgagcgtgaattactaggtattaccaaagcttctttggctactgaatcgttcatc
tcagcggcatcgttccaagaaacgactcgtgtacttacagaagctgctgtaggtggtaag
agtgaccaattgcgtggtctgaaagaaaacgtaatcgttggtcgtctaatccctgcaggt
acaggttatgcatatcacaatgctcgtaacgaagcgcgtgctaatgttaaagatgaaggt
gtagaagcaccggttatcactgcaagtgaagcagagaagaacttagctgacttacttaac
ttggccggaagtgccgactaa
DBGET
integrated database retrieval system
