Salimicrobium jeotgali: AAV35_002205
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Entry
AAV35_002205 CDS
T04359
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sje
Salimicrobium jeotgali
Pathway
sje03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sje00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AAV35_002205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sje03021
]
AAV35_002205
03019 Messenger RNA biogenesis [BR:
sje03019
]
AAV35_002205
Transcription machinery [BR:
sje03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AAV35_002205
Messenger RNA biogenesis [BR:
sje03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AAV35_002205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
AAA_22
AAA_25
AAA_24
Spore_III_AA
ATPase_2
AAA
Motif
Other DBs
NCBI-ProteinID:
AKG03717
UniProt:
K2H6N7
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All DBs
Position
441977..443254
Genome browser
AA seq
425 aa
AA seq
DB search
MAELNISSLETLKLKELYDKAREYKVSYYSKLTKRELIFAILKAQAEKDGYLFMDGILEI
IPSEGFGFLRPINYSPSAEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYYGLLHVDA
VNGEDPDSAKQRVHFPALTPLYPDRHMNLEVAQNQLATRIMDVMAPVGYGQRGLIVAPPK
AGKTMLLKQMANSIAKNHPDSKLIILLVDERPEEVTDIERSVAPDVDVVSSTFDEVPENH
IKVSELVLERSMRLVEHKRDVIVLMDSITRLARAYNLVIPPSGRTLSGGIDPASFHRPKR
FFGAARNIEEGGSLTILATALVDTGSKMDDVIYEEFKGTGNMELHLDRNLAERRIFPSID
LKRSGTRKEELLLSKEQLEKMWAIRQAMTSSHDFYERFLRRMKKSKDNREFFDVMDKEMN
QTSKK
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
gtggcggaattgaacatttccagcttggaaacattgaaattgaaagaactctatgacaag
gcacgtgaatacaaagtgtcctattactccaaactgacaaagcgtgaacttatatttgcc
atcctgaaagcacaggccgaaaaggacggctatctattcatggacggcattctcgaaatc
atcccttcggaaggtttcggtttcctgcggccgatcaactactccccgagtgcggaggac
atctatatttcggcttcccagataagaagattcgatttaaggaacggggacaaagtctcc
ggtaaagtccgcccgccgaaggagaacgaacggtactacggcctgctgcacgtggacgca
gtgaacggggaagacccggactccgccaagcagcgggtacactttccggcgttgaccccg
ctctatccggatcgtcacatgaatctcgaagtggcgcaaaatcagctggcaacgaggatc
atggatgtaatggctcctgtcgggtacggccagcgcgggcttatcgtcgctccgccgaaa
gccgggaaaacgatgcttctgaagcagatggcgaacagtatagccaaaaaccatcccgac
tcgaaactgatcattcttctcgtcgacgagcgtccggaagaagtgacggatatcgaacgt
tcggtagctccggatgtggatgtagtctcctccacgttcgatgaagtgccggagaaccat
atcaaagtttcggaactggtcctcgagcggtcgatgcgtctcgtggaacataaacgggac
gtgattgtactgatggacagtatcactcgtcttgccagagcttacaacctggtgattccg
ccgagcgggcgcacgctttcaggtggtatcgatcctgcttctttccaccgtccgaaaagg
ttcttcggagccgcgcgtaacatcgaagaaggcggcagtctcaccattcttgctacggct
ctggtggataccggttcgaagatggacgacgtcatttatgaagaattcaagggcaccggt
aatatggaacttcatctcgaccgcaatctggcggagcgaaggatcttcccgtcgatcgat
ctgaaacggtccggcacgcgaaaagaggaactgcttctttcgaaagaacagctggagaaa
atgtgggcgatccgtcaggcgatgacgagctcccacgatttctacgaacgcttcctgcgc
cgcatgaagaaatcgaaagacaaccgtgaattcttcgacgtgatggataaggagatgaat
cagacatctaaaaagtaa
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