Salimicrobium jeotgali: AAV35_006770
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Entry
AAV35_006770 CDS
T04359
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
sje
Salimicrobium jeotgali
Pathway
sje03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sje00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AAV35_006770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sje03019
]
AAV35_006770
Messenger RNA biogenesis [BR:
sje03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AAV35_006770
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
Phage_holin_6_1
Nup54
Motif
Other DBs
NCBI-ProteinID:
AKG04520
UniProt:
K2FPD9
LinkDB
All DBs
Position
complement(1360369..1361931)
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AA seq
520 aa
AA seq
DB search
MGIVSTIIFILLALIIGLAAGYFVRKSIAEAKISSAEDLAKQIVEEGRRNAESAKKEALL
EAKEENQAFRQEAENEIRERRTELQKFENRLNQKEENLDRKSVTLDQRELSVEKKEDMLG
ERQTQLEQEEKDMHQLVEKQQSELERISGLTADQAKQVILDRVENDLSHETSLMVKEAEN
KAKEEADKKAKNILSLAMQRCAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRTLETLT
GIDLIIDDTPEAVILSGFDPVRREIARISLEKLVQDGRIHPARIEEMVEKSRREIDDYIR
EIGEETTFEVGVHGFHPDLVKVLGRLKYRTSYGQNVLKHSTEVAHLSGLMAAELGEDVTL
AKRAGLLHDIGKAIDHEVEGSHVEIGKELAVKYKENDTVINAIASHHGDEEPTSIISVLV
AAADALSAARPGARSETLENYVKRLERLEEISESYDGVEKSFAIQAGREIRIMVSPDEID
DLEATKLARNIRGRIEDELNYPGHIKVTVIRETRSVEYAK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgggtattgtatccacgatcatcttcatcttgcttgccctgatcatcggattggctgca
ggttatttcgtccggaagtcgattgccgaagcgaagatttcgagcgcagaggatcttgcg
aagcaaattgttgaagaaggtcgaaggaatgcagaatcagctaaaaaagaggctcttctg
gaagcgaaagaagagaatcaggcgtttcgtcaggaagcggaaaatgagataagggaacgg
cgtacggaactgcaaaagtttgaaaatcgtttgaaccagaaagaagagaacctggaccgt
aagagtgtcactctcgatcagcgtgaactttctgtagagaagaaagaggatatgctgggt
gagagacagacacagctggaacaggaagaaaaggatatgcatcagctcgtggagaaacag
cagtcggagcttgaacgtatatcgggtctgactgcggaccaggcaaaacaggtaatcctg
gatcgtgtggaaaatgatctttcccacgaaacttcgctcatggttaaggaagctgagaat
aaggcgaaagaagaggccgataagaaggcgaaaaacattctttccctggctatgcagcgc
tgtgctgccgatcatgtagctgaaactacggtatctgtcgtaaatcttcctaacgatgaa
atgaaaggcagaatcatcgggagagaaggaaggaatatccggacactggagacccttaca
ggaatcgatctgattatagacgatacaccggaagcggttattctttcagggttcgatccg
gtacgccgtgaaattgcacgtatttctcttgaaaaactcgtacaggatggtcgtatccat
ccggcccgtatcgaggaaatggtcgagaaatcgagaagagaaatagacgactacattcgg
gaaatcggtgaagagacaacctttgaagtaggtgtccacggttttcatccggacctggtt
aaagttctcggacgtctgaagtatcgtaccagttacggtcagaatgttttgaaacactcg
acggaagtggcgcatttatccggccttatggctgccgagctcggtgaagacgtgacgctt
gcgaaacgtgccggtcttcttcatgacatcggtaaagcgatcgaccatgaagtggaagga
agtcacgtggaaatcggtaaggaactcgcagtgaaatataaggaaaacgacacagtgatc
aatgctatcgcttcacaccatggagatgaagaacctacttcgatcatctcggtactggta
gcggctgcagatgcattgtctgccgcaagacccggagcaagaagcgagactctggaaaac
tacgttaaacgattggaaagactggaagaaatttcggaatcatatgatggtgtagaaaaa
tcttttgcaattcaggccggtcgtgaaatcagaatcatggtaagccctgatgaaattgat
gatttagaggcaacgaaactggccagaaatattcgtggccgtatagaagatgaattgaat
taccctgggcatatcaaagtcaccgtaatccgggagacacgctcagtagagtatgcaaaa
taa
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