Salimicrobium jeotgali: AAV35_011825
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Entry
AAV35_011825 CDS
T04359
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sje
Salimicrobium jeotgali
Pathway
sje03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sje00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AAV35_011825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sje03019
]
AAV35_011825
03009 Ribosome biogenesis [BR:
sje03009
]
AAV35_011825
Enzymes [BR:
sje01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AAV35_011825
Messenger RNA biogenesis [BR:
sje03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AAV35_011825
Ribosome biogenesis [BR:
sje03009
]
Prokaryotic type
rRNA helicases
AAV35_011825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
SUa-2TM
ERCC3_RAD25_C
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKG05384
UniProt:
K2H5X0
LinkDB
All DBs
Position
complement(2375023..2376498)
Genome browser
AA seq
491 aa
AA seq
DB search
MTKFNSLGLSDPILKALDHMGFEETTPIQEQTIPLGMEGHDVIGQAQTGTGKTAAFGIPM
IEKVDKQVRGVQGLVIAPTRELAIQVAEELNRLGKNAGVRSLPVYGGSNMERQIRALKNN
EIVVATPGRLLDHIRRKTIKLEQVHTSVLDEADEMLNMGFIEDIRDILKALPTERQTLLF
SATMPKEIRDIATTLMNTPKEVKTKSKEMTVSNIDQYYVEIAEKHKFDALTRLLDIHAPD
LAIVFGRTKRRVDEVADALQVRGFRAEGIHGDLTQGKRMSVLKKFKEGRIEILVATDVAA
RGLDISDVTHVYNFDIPQDPESYVHRIGRTGRAGRKGESISFVTPREKDQLNLIEKLTKK
KIEKLRVPSYKEAQKGQQDIAVTKLIEKMNADDINDYKQSASDLMDQYEAQDLVAAALKM
LTKERQETPVRLSSVQPISTRNAKGAKGGRHKRGGGGQGRTSQRGNSNKRPYNKGGNKGR
SKNFNQNNKGK
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
gtgactaaatttaattcattaggtttatcagatccgattttgaaagctttagatcatatg
ggatttgaagaaacgacacccattcaggaacaaacgatccctcttggaatggagggtcat
gatgttatcggccaggctcagacaggtactggtaaaacagcagctttcggaatccctatg
atcgaaaaagtagacaagcaggtgcgcggcgtacagggtcttgtaattgccccgacacgc
gaacttgccattcaagtagcggaagagttgaaccgtctaggtaaaaacgcaggagtacgg
tcactgccagtgtatggcggttcgaacatggaacgtcagatccgtgcacttaaaaacaac
gaaatcgttgttgctacgccgggacgtctcctcgatcatatccggaggaaaacaattaag
cttgaacaggtacacacttctgtacttgatgaagcagacgaaatgcttaacatgggcttc
atcgaagatatccgtgacattctgaaagctctcccgacagagcgtcagacgcttctcttc
tccgctactatgccgaaagagatccgtgatattgcaacaacgctcatgaacacgccgaaa
gaagttaagaccaagtcaaaagaaatgactgtatcaaatattgatcagtattatgtggaa
attgccgagaagcataaattcgacgcattgacacgccttctcgatattcatgcaccggac
cttgcgatcgttttcggtcgtacgaaacgccgtgtggatgaagtggcagatgcccttcag
gttcgcggattccgcgcagaaggtatccacggagaccttactcagggtaaacgtatgtcc
gtattgaagaaattcaaagagggccggattgaaatcctcgtcgctaccgatgtggcagcg
cgtggtctcgatatctcggacgtgacacacgtctataactttgatattccacaggatcct
gaaagttacgtgcaccgtatcggccgtaccggtcgtgccggacgtaaaggggaatccatt
tctttcgtcacgccgcgtgagaaagatcagctgaacctgattgagaagctgacgaagaaa
aaaatcgagaagctccgtgtgccttcttataaagaagcacaaaaaggacagcaggacatc
gcagtcacgaagcttatcgaaaaaatgaacgcagatgatattaatgactacaaacagtcg
gccagcgatcttatggatcagtacgaggcgcaggatcttgtagcggcggctctgaaaatg
ctgactaaagaaagacaggaaacgcctgtacgtctgtcatcggtacaaccgatcagcacg
agaaacgctaaaggcgccaaaggcgggagacacaagcgcggtggaggcggccagggccgt
acctcccagcggggtaattcgaacaaacgcccttacaataagggtggcaacaaagggaga
agtaaaaacttcaaccagaacaacaaaggtaaatga
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