Sulfonitrofixus jiaomeiensis: WCY20_10280
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Entry
WCY20_10280 CDS
T11201
Name
(GenBank) ribonuclease R family protein
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sji Sulfonitrofixus jiaomeiensis
Pathway
sji03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sji00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WCY20_10280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sji03019
]
WCY20_10280
03016 Transfer RNA biogenesis [BR:
sji03016
]
WCY20_10280
Enzymes [BR:
sji01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
WCY20_10280
Messenger RNA biogenesis [BR:
sji03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
WCY20_10280
Transfer RNA biogenesis [BR:
sji03016
]
Prokaryotic type
tRNA degradation factors
WCY20_10280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_2nd
CSD2
OB_RNR_1st
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
XAU11686
LinkDB
All DBs
Position
2056603..2058558
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AA seq
651 aa
AA seq
DB search
MKNLLIRLTVGLYEQDITEEEMEHVQKWLAQGYLVKEEKLYRLPSKYRAGSIMMAQQGSA
YLRVVGANVRDLYIDEHDLGSAKDGDIVIAQRLLGKRGGPSAKVVEVLGRAETYSVAILT
VNKGQKGLVDIRTGYPAGVPLSAAELAKYEEGALFKINDQTSEVMAELGHISDPLVDEKI
VLAQFNKHDEFEQDVLDLAQSFDKNVDVSFYPDRKDLRSLPFCTIDPVTAKDFDDAICYI
PEKNILYVAIADVSSYVEPFGPIDAEAIYRSFSIYLPHRSIPMLPRQLSETLCSLQPHVD
RLAFVFELHLDGLKVVKSELYEAIIHSKRRFTYEEVDLFFEGGLTPKNSEEEPVFGYLPK
LRELTDALKEERLKYGYDFHSEEVEMELDEEQNIISTTLSEETPSHGLIEDCMLLANKAA
ASRYTHGVFRIHEPSSQIKLQSLYQELAGIGIIVEPKESMKETIDFIQAEARKRGLDKEV
DTLIIRAQMQARYAPHNVGHFGLGFDAYTHFTSPIRRYSDLIVHRHLKALLAKDTEESSY
VLRNIDALCFSISEKEREASTIEIRFMQRKFARWANGLIGQEFRARVHGTDPDYIAEILE
PIVGAVVNLSVSTPVTLFDDIIVRIDKVDLATAKISASLVKKLDTDPMELS
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaaaccttttgatacgattgaccgtgggactttacgaacaggacatcaccgaagag
gagatggaacatgttcagaaatggcttgctcaaggctacctcgtaaaagaggagaaactc
taccgcctcccctcaaaataccgcgcaggttcaataatgatggcccagcagggttccgct
tacctgcgggtagtcggtgccaatgtccgcgatctctacatcgatgaacacgatctcggc
agtgccaaagacggtgacatcgtcatcgcccaacgtctgctgggaaaacgcggcggacca
agcgccaaggtcgtagaggtcctcggacgcgccgaaacctacagcgttgccatactgacg
gtcaacaaggggcaaaaagggctggtcgacattcgtaccggctacccggcaggcgttccg
ctcagcgccgccgaacttgccaaatacgaagagggcgccctcttcaaaatcaacgaccag
accagcgaagtcatggcagagctgggccacatcagcgatcctctggtcgatgagaagatc
gtgctggcgcagtttaacaagcacgatgaattcgagcaggatgtcctcgatctggcgcag
agttttgacaagaacgtggacgtctcgttctaccccgaccgcaaagacctgcgaagcctc
cctttttgtactatcgacccggtcaccgcaaaagactttgacgatgccatctgctacatc
cccgagaagaacatcctctacgtcgccatcgccgacgtcagcagctatgtcgagcccttt
ggtccgatcgatgccgaagcgatctaccgtagtttctcaatctacctgccgcaccgttcc
attccgatgctgccgcgccaactctccgagaccctctgttcgcttcagcctcatgtcgac
cgtctcgcctttgtttttgaactgcatctcgatgggctaaaagtggtaaaaagcgaactg
tacgaggccattatccactccaaacgccgctttacctatgaagaggtcgacctctttttc
gaaggcggccttacgccaaaaaacagcgaggaagaacctgtattcggctacctccccaag
ctgcgcgaactgaccgacgcgctcaaagaggagcggctgaaatacggctatgacttccat
tccgaagaggtcgagatggaactcgacgaggagcaaaacatcatctctactacgctgagc
gaagaaaccccctcgcacggactgatcgaagactgtatgcttttggccaacaaggcggca
gcctcgcgttacacccacggtgtcttccgtatccacgaaccttcaagccagatcaagctc
cagagcctctatcaggagcttgcaggcatcggcatcatcgtcgaacccaaagagtccatg
aaagagacgatcgatttcattcaggccgaagcacgcaaacgcggcctcgacaaggaggta
gacaccctcatcatccgcgcgcagatgcaggcgcgctatgccccgcacaatgtcggccac
ttcgggctcgggtttgacgcctacacccatttcacctcgccgatccgccgctattcggat
ctcatcgtccaccgtcatctcaaggccctgctggccaaggacaccgaggagagttcctac
gtcctgcgcaacatcgacgccctctgtttcagcatcagcgaaaaagagcgcgaggcctct
acgatcgagatacgtttcatgcagcgcaaattcgcccgctgggcaaacggactgatcggg
caggagttcagggcacgagtccacggcacggatccggactacatcgccgagatactcgaa
ccgatcgtcggcgcggtggtcaacctcagcgtcagtaccccggtcaccctttttgacgat
atcatcgtccgtatcgacaaggtcgatctggcaacggccaagatcagcgccagcctcgtc
aaaaagcttgacaccgacccgatggaactgagctga
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