Sulfonitrofixus jiaomeiensis: WCY20_10420
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Entry
WCY20_10420 CDS
T11201
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
sji Sulfonitrofixus jiaomeiensis
Brite
KEGG Orthology (KO) [BR:
sji00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sji03019
]
WCY20_10420 (hrpB)
Enzymes [BR:
sji01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
WCY20_10420 (hrpB)
Messenger RNA biogenesis [BR:
sji03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
WCY20_10420 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
ResIII
CON_HrpB
AAA_30
AAA_19
Flavi_DEAD
Cas3-like_C_2
HA2_C
DUF7744
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
XAU11714
LinkDB
All DBs
Position
2084576..2087098
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AA seq
840 aa
AA seq
DB search
MQNLPIRQVIPRIVTTLSESNRLVLQAPPGAGKTTAVPLTLLDETWLEGRQIIMLEPRRL
AARNAAARMAELLGEKVGETVGYQIRADRCVSSRTKIIVVTEGILTRMLQGDPAIENAAL
LIFDEFHERSLHGDLALALALQSQALLRDDLKIMVMSATLNTEAIAALLSNAPVITSEGR
SFPVENIYLDSKTPHPSPMQLSALIAKTVGDVLRREKGSILVFLPGVREIKKTEAKLRET
FKEDNLIIAPLYGDMSKQAQDAAIRPCSEGKRKIVLATNIAETSLTIEGITVVIDAGLQR
VATFDSGSGMNRLHTLPVSQDAAVQRSGRAGRLSPGRCYRLWHEHRPLARHSTPEIMTSD
LVPMMLELANWGVEEVDELQWLDLPPAAAVEHARELLRELGALEGNTITPHGRKILELGT
HPRLAHMILKGSELGYGETGCLIAALLSEKEIFTGSARHSADLSLRVNALQERHSGSHID
QGAFRRVLETASALRKKLNSSGKIKQSRADTVGLLLGFAYPDRIAGCRGPKESRYLLSGG
KGAVLNSEDGLFGEPYLVIADLDAAGNNARIFRGAALFETTMQEYFGDLIVKERLTRWND
ESERVEAREVTRLGAITLNERPLRNIDDSEIKMALLGAVREKGLDTLTWSKEALALRQRM
DFLNYWKEQDDKAAALIGDLPDVSDTWLLEHLEQWLLPHLERVKSFKACRKLDTYTMLSS
LLTWDQKKHIDILAPARIKVPSGSDIRLNYEDPASPVLAVRLQELFGMLETPRLINGTVA
ITIELLSPAHRPMQVTKDLYSFWESTYHEVKKELRGKYKKHYWPDDPFTARATSKTKKNM
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaacctccctatccgtcaggtcataccccgtatcgtcaccaccctgagcgaatcg
aaccggctcgtgcttcaggctcctccgggtgcgggtaagacgacggcggtgccccttacg
ctgctggatgagacatggttggagggacgccagatcatcatgctcgagccgcgccgcctg
gctgcacgaaacgccgcggcccgcatggccgaactgctgggagaaaaggtcggcgagacg
gtggggtaccagatccgcgcggaccgttgtgtaagcagcaggacaaagatcattgtcgtg
accgaggggatcttgacccgcatgctccagggcgatccggcgatcgagaacgccgccctg
ctgatcttcgacgagttccacgaacgcagcctccacggcgaccttgccctcgcgcttgcc
ctgcagtcgcaggcgctgctgcgcgacgatctcaagatcatggtgatgtccgccaccctc
aacaccgaagccattgccgcccttcttagcaatgcccccgtcatcaccagcgaggggcgc
agttttccggtagagaacatctacctcgacagcaaaacaccccacccctcaccgatgcag
ctgagtgcgcttattgccaagacagtcggtgacgttctgcgccgtgaaaagggcagcatc
ctggtctttctcccgggggtcagggagatcaaaaagaccgaagctaaactgcgcgagacg
ttcaaagaagacaacctcatcatcgccccgctctatggcgacatgagcaagcaggctcag
gatgctgcgatcagaccctgcagcgagggaaaacgcaagatcgtccttgccaccaacatt
gccgagacaagtctcaccatcgaagggatcaccgtcgtcatcgatgccggcctgcagcgg
gttgccacctttgacagcggttcggggatgaaccgcctccacactctccctgtatcgcag
gacgccgcagtgcagcgcagcggccgtgcgggacgtctgagcccggggagatgctaccgt
ctctggcatgagcaccgtccgcttgcgcgccacagcaccccggagataatgacaagcgac
cttgtaccgatgatgctcgaacttgccaactggggcgtcgaggaagtggacgagctgcag
tggctcgaccttccgcccgcagcagccgtcgaacatgcccgcgaactgctcagagaactc
ggcgccctagagggcaacacgatcaccccgcacggcaggaagatacttgaactgggaacc
cacccccgccttgcccatatgatcctcaaaggctccgaactcggctacggggagactggc
tgcctgatcgccgcgctgctgagcgaaaaagagatcttcaccggcagcgcccgccattcg
gccgacctctctctgagagtaaatgccctacaggagcgccactcgggcagccacatcgac
cagggagccttcaggcgcgtcctggagacggcttcggccttgcgaaaaaaacttaacagc
agcggtaaaatcaaacaaagccgtgccgataccgtcggtcttctgctgggtttcgcctac
cccgaccgtatcgccggatgccgcggcccgaaagagagccgctaccttctcagcggagga
aagggtgccgttctaaacagcgaagacggactcttcggcgaaccctaccttgtcattgcc
gacctcgatgccgccgggaacaacgcccgcatcttccgtggcgcagcactctttgagacc
acgatgcaagagtatttcggcgaccttattgtaaaagagcgtctgacgaggtggaacgat
gagagcgagcgggtcgaagcaagagaggtaacaaggctcggtgcgatcacgcttaatgaa
cgccctctccgaaacattgacgacagcgagatcaagatggcactgctcggcgcggtcaga
gagaaggggctggacactttgacatggtcgaaagaggcactcgctctgcgccaaagaatg
gacttcctgaattactggaaagaacaagatgacaaagcagcagccctcatcggtgacctg
cccgacgtcagcgacacatggctgctggagcatcttgaacaatggctgctgccgcacctc
gagagggtaaaaagctttaaagcctgccgcaagctcgacacttatacgatgctctcgtct
ctccttacatgggatcagaagaaacatatcgacattctcgccccggccagaattaaagtg
ccaagcggctcagacatacgcctaaactacgaagacccggcttccccggtactggcggta
cggctgcaggagcttttcggtatgctggaaacaccgcgtctcatcaacggcaccgtggcg
atcaccatcgagctgctctcgccggcgcaccgtccgatgcaggtgacgaaggatctgtac
agcttctgggaaagcacctatcatgaggtcaaaaaggagctccgcggcaagtacaaaaaa
cactactggcccgacgaccccttcacggcccgggccaccagcaagaccaaaaaaaacatg
taa
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