Sulfonitrofixus jiaomeiensis: WCY20_11105
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Entry
WCY20_11105 CDS
T11201
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sji Sulfonitrofixus jiaomeiensis
Pathway
sji03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sji00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WCY20_11105 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sji03021
]
WCY20_11105 (rho)
03019 Messenger RNA biogenesis [BR:
sji03019
]
WCY20_11105 (rho)
Transcription machinery [BR:
sji03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
WCY20_11105 (rho)
Messenger RNA biogenesis [BR:
sji03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
WCY20_11105 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
ATPase_2
OB_RNB
Spore_III_AA
AAA
Motif
Other DBs
NCBI-ProteinID:
XAU11845
LinkDB
All DBs
Position
2240373..2241692
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AA seq
439 aa
AA seq
DB search
MSDTRQQKNNKTSRTHVPVTGHTIEDLRTKTLDELVKTADELGVEQPNELKRQDLIFEIL
KSQTSQGGFILFTGILETMQDGYGFLRSIDTTFSDSLHDAYVSSTQIKKFALRNGDVVTG
QVRPPKDQERYYALLKVEAINYLPPAESKKRPLFENLTPLYALEQLKLEYKPEKLTGRML
DLFSPIGKGQRALIVAPPRSGKTELMKEIAHGITSNHPEVELMVLLVDERPEEVTDMERS
VKGEVYSSTFDMPAKNHVKVAEMVIERAKRRVEIGKDVVILLDSITRLARAYNTVTPSSG
KVLSGGVDANALHKPKRFFGAARNIENGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSE
VVLSRKISDRRIFPAIDILKSGTRKEELLIGPEILQKVFILRSMLHKQEDEVEALKFLYT
KMKKMPTNEDFLNMMNEGN
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacacccgtcagcaaaaaaacaacaaaacctcccgaacgcatgttcctgtcacc
ggccacaccattgaagatctacgtaccaaaaccttggatgaacttgtcaaaacagcagat
gaacttggggttgagcagcccaatgaactcaagcgtcaagatctgatatttgagatattg
aagtcacagacatcgcaaggcgggtttatcctctttaccggtattttggagaccatgcag
gacggttacggctttttacgctctattgacacgaccttcagcgactcgcttcacgatgcc
tacgtctcaagcacacagatcaagaagtttgcccttcgtaacggtgacgtcgttaccggt
caggtgcgtccgccgaaagaccaggagcgttactatgccctgcttaaagtcgaggcgatc
aactacctgccgccggccgagagcaaaaaacgtccactgtttgaaaaccttacgccgctt
tatgcactggaacagctcaaacttgagtacaaacctgaaaaactgacaggccgtatgctg
gatctcttctcgcctatcggtaaaggtcagcgcgcgctgatcgtcgcaccgcctcgttcg
ggtaaaacagagctgatgaaagagatcgctcacggtattacctccaaccatccggaagtc
gaattgatggtcctgcttgtcgacgaacgtcccgaagaggtcaccgatatggaacgttct
gtcaagggtgaagtctacagttcaacctttgatatgccggcgaaaaaccacgtaaaagtg
gctgagatggtcatcgaacgtgcgaagcgccgcgtcgagatcggtaaagatgtggtcatc
ctgctcgactcgatcacacgtctggcccgtgcctacaatacggtaacaccgtcaagcggt
aaagtactctcaggcggggtggatgccaatgccctgcacaaaccgaagcgctttttcggt
gcggcgcgtaatatagaaaacggcggttcgctgaccatcatcgctacggctcttgttgat
accggcagccgtatggacgaggtgatctttgaagagttcaaaggaacaggaaactccgaa
gtcgtactaagccgcaagatctcagaccgccgtatcttcccggctatcgacatcttgaag
tccggaacgcgtaaagaagagctgcttatcggaccggagatcctgcaaaaggtctttatt
ctgcgttcaatgctgcataaacaagaagatgaagtcgaggcacttaaattcctctacacc
aagatgaaaaagatgccgaccaacgaagactttttaaatatgatgaacgaaggcaactag
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