Streptomyces janthinus: RI060_07100
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Entry
RI060_07100 CDS
T09385
Name
(GenBank) RNA polymerase sigma factor SigF
KO
K03090
RNA polymerase sigma-B factor
Organism
sjn
Streptomyces janthinus
Brite
KEGG Orthology (KO) [BR:
sjn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sjn03021
]
RI060_07100
Transcription machinery [BR:
sjn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RI060_07100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
HTH_23
HTH_Crp_2
HTH_24
DUF7343
GerE
HTH_28
MarR_2
HTH_3
DUF7342
MarR
YdaS_toxin
Sigma70_ECF
DUF134
UPF0122
Motif
Other DBs
NCBI-ProteinID:
WND17133
LinkDB
All DBs
Position
complement(1580955..1581749)
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AA seq
264 aa
AA seq
DB search
MLTHTSPKQHPHDDAPDTAEAFRRLAALPAGPERDALRDEIVEAWLPMADRLAGRFRSRG
ESLDDLRQVAALGLVKAVDRYDPELGNAFESYAVPTITGEIKRHFRDHMWTLHVPRRVQD
LRNRVRFASQDLSQTISGRRPTVAEIAEHAKLSEEDVKTGLEALESFTALSLDAELPGSE
DGYSLSDALGSPDPALDTVVDREAVKDRLAALPERERAILYMRFFSDMTQSRIAEELGIS
QMHVSRLISRCCGRVREQVMRDVA
NT seq
795 nt
NT seq
+upstream
nt +downstream
nt
atgctgactcacacgagcccgaagcagcacccccacgacgacgcccccgacaccgccgag
gccttccgcaggctcgccgccctccccgccggcccggagcgcgacgcgctccgcgacgag
atcgtcgaggcctggctgcccatggcggaccgcctcgccggacgcttccgcagccgcggc
gagagcctcgacgatctgcgccaggtcgcggccctcggtctggtcaaggccgtggaccgg
tacgaccccgagctcggcaacgccttcgagagctatgccgtgcccaccatcaccggcgag
atcaagaggcacttccgtgaccacatgtggaccctgcacgtaccccgccgggtccaggac
ctgcgcaaccgtgtccggttcgcctcgcaggacctgtcccagaccatctccggccgccgg
cccaccgtggccgagatcgccgagcacgcgaagctgagcgaggaggacgtcaagaccggt
ctggaggcgctggagagcttcaccgccctgtccctggacgcggagctgcccggcagcgag
gacgggtactccctgagcgacgcgctcgggtcgcccgatcccgcgctggacacggtcgtg
gaccgggaggcggtgaaggaccggctggccgcgctgccggagcgggagcgggcgattctg
tacatgcggttcttctccgacatgacgcagagccggatcgccgaggagttggggatctcg
cagatgcatgtgtcccggctgatcagccggtgctgcggcagggtgcgggagcaggtcatg
cgggacgtggcgtag
DBGET
integrated database retrieval system
