Streptomyces violaceus: RI060_08470
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Entry
RI060_08470 CDS
T09385
Name
(GenBank) rhamnogalacturonan lyase B N-terminal domain-containing protein
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
sjn
Streptomyces violaceus
Brite
KEGG Orthology (KO) [BR:
sjn00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
RI060_08470
Enzymes [BR:
sjn01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
RI060_08470
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GFIT
Motif
Pfam:
RhgB_N
CBM-like
fn3_3
CarboxypepD_reg
Motif
Other DBs
NCBI-ProteinID:
WND17372
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Position
1878111..1879775
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AA seq
554 aa
AA seq
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MSGSANRPVGRRAFVLAATAAAGTALTGTAHAAGFGYSDDGSNYVVDTGAQLVFKVSKST
GDLTSLVYRGTEYQGYGGMNSHIESGLGASTVGIKQSGSTILVSVTHGTLKHYYAARSGE
NNVYLWTNKADTSVSATRYIVRVKKGAFLNDEPDSYTYAPTTIEASDVFRKSDGQTRSKH
YSKRRVMDYDYLGWSAGGVGLWIVRSNHEKASGGPFYRSLLRHQSADGGGLYEILYYGQN
QTEAQRFGLQGPYVIAFTDGGAPSSALFPGTLTTPWADSLGISGYVPAGGRGKVAGVGIS
GRNTAYPYTVGLANSTAQYWGSARSSDGYFSLPGVLPGTYTLTVFKGELAVYTTSVSVSA
GGTTTLNTIALPSSNDPANASAIWRIGDWNGTPGGFKNADLMTYAHPSDVRAASWTGNVV
IGGGGETAAFPCYLWKDVNSGILVYFRLTAAQATAAHTLRIGVTTAYANGRPQVTVNDTW
TSAVPSPPTQPNTRSLTNGSYRGNNHTFTYGVPASAWKTDTSQYNVLRIDVVSGSGATGF
LSAGTAIDAIDLLA
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgtccggatccgcgaacagaccggtcggccgccgcgccttcgtcctcgccgccaccgcc
gccgcgggcacggccctgaccggcacggcacacgccgccggcttcggctacagcgacgac
ggctcgaactacgtcgtcgacaccggcgcccagctggtcttcaaggtcagcaaatccacc
ggcgacctgacctcgctggtctaccggggcacggagtaccagggctacggcggcatgaac
tcgcacatcgagtccgggctcggcgcctccaccgtcggcatcaagcagtccggttcgacg
atcctcgtctcggtcacgcacggcacgctgaagcactactacgcggcccgcagcggtgag
aacaacgtctacctgtggaccaacaaggccgacacgtccgtctccgcgacccggtacatc
gtgcgtgtgaagaagggcgcgttcctcaacgacgagcccgactcgtacacctacgcgccc
accaccatcgaggcctcggacgtgttcaggaagtccgacgggcagacccgctcgaagcac
tactccaagcggcgcgtcatggactacgactatctcggctggtccgccggcggggtcggc
ctgtggatcgtgcgcagcaaccacgagaaggcctccggcggccccttctaccgctccctg
ctgcgtcaccagagcgcggacggcggcggtctgtacgagatcctctactacggccagaac
cagaccgaggcgcagcgcttcggcctccagggcccgtacgtcatcgccttcacggacggc
ggtgcgccctcctcggcgctgttcccgggcacactgaccacgccgtgggccgactcgctc
ggcatctcgggttacgtgccggccggcggccggggcaaggtggcgggcgtcggtatctcc
gggcggaacacggcgtacccgtacacggtcgggctggccaactccacggcgcagtactgg
ggttcggcgcgttcctcggacggctacttctccctcccgggcgtgctgccggggacgtac
acgctgaccgtcttcaagggcgagctggcggtgtacaccacgtcggtgagcgtgtcggcg
ggcgggacgaccaccctgaacacgatcgccctgccgtcctccaacgaccccgccaacgcg
agcgcgatctggcggatcggcgactggaacggcacgccgggcgggttcaagaacgcggac
ctgatgacgtacgcacatccgtcggacgtccgggccgcgtcctggaccgggaacgtggtg
atcggcggcggcggtgagacggcggccttcccctgctacctctggaaggacgtcaacagc
ggcatcctcgtgtacttcaggctgaccgccgcgcaggccaccgccgcgcacaccctgcgc
atcggcgtgacgacggcgtacgcgaacggccggccccaggtcaccgtcaacgacacctgg
acctcggccgtcccctcgccgcccacccagccgaacacccggtcgctgaccaacggttcg
taccgcggcaacaaccacacgttcacgtacggcgtcccggcgtccgcctggaagacggac
acgagtcagtacaacgtgctcaggatcgacgtggtgagcgggtcgggggcgaccggcttc
ctcagtgcggggacggcgatcgacgcgatcgatctgctggcctag
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