Streptomyces janthinus: RI060_10875
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Entry
RI060_10875 CDS
T09385
Name
(GenBank) HAMP domain-containing protein
Organism
sjn
Streptomyces janthinus
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAMP
HAMP_2
Response_reg
HATPase_c
HisKA
GAF_2
GAF
DUF4795
Nup49_C
ATG14
Med21
OKR_DC_1_N
RNase_Y_N
Motif
Other DBs
NCBI-ProteinID:
WND17815
LinkDB
All DBs
Position
complement(2427438..2432903)
Genome browser
AA seq
1821 aa
AA seq
DB search
MESGAATRGTKTRAKGGQSPSNQGKTRNGTTEVDTAALNRLMAALVSMRDGNFRKRLTVS
GDGVMAEIAAVFNEVADRNLHLTGELARVRRMVGREGKLTERLETGACEGSWSTAIDNSN
ALVDDLVRPVSEVSRVLSAVAEGDLSPRMELRTQAPDGNGHPLRGEFLKVGRTVNNLVDQ
LSTFTDEVTRVASEVGTEGKLGGQARVRGMSGSWRDLTDSVNTMAYRLTAQVRDIALVTT
AVAKGDLSRKVTVQVAGEMLELKNTVNTMVDQLSAFSSEVTRVAREVGTEGALGGQAQVP
GVDGVWKELTDSVNTMAGNLTAQVRGIAEVTTAVANGDLSRKVTVQARGEVAQLAETINQ
MTETLRIFADEVTRVANEVGAEGRLGGQANVPGAAGTWKDLTDSVNTVFRNLTTQVRDIA
AVTTAVANGDLSQKVTVDVAGEMLELKNTVNTMVDQLSAFGAEVTRVAREIGVEGELGGQ
AQVPGVAGTWKDLTDSVNTAFRNLTGQVRNIAQVTTAVANGDLSQKVTVDVSGEMLKMKN
TVNTMVDQLSSFADQVTRMARDVGTEGRLGGQARVDGVSGTWKELTDSVNSMAGNLTSQV
RNIAQVTTAVARGDLSQKIDVDARGEILELKNTINTMVDQLSAFADQVTRVAREVGTDGR
LGGQAQVPGVAGVWRDLTDSVNGMAGNLTAQVRNIAQVATAVARGDLSQKIDVDARGEIL
ELKNTLNTMVDQLSSFAQEVTRVAREVGTEGILGGQAEVQGVSGTWKDLTQSVNGMANNL
TIQVRNIAEVTTAVARGDLSKKITVDAKGEILELVTTVNTMVDQLSSFAEQVTRVAREVG
TEGILGGQAHVPGVTGIWKDLSDNVNLMAKNLTTQVRNISQVSAAVANGDLTRQVTIEAR
GEVAQLADTINTMVKTLSSFAEQVTKVAREVGTDGILGGQAHVPGVAGTWKDLTESVNGM
ASNLTGQVRNIAMVTTAIAKGDLTKKIDIDARGEILELKTTINTMVDQLSSFAEEVTRVA
REVGTEGQLGGQARVRDVDGTWRDLTESVNEMAGNLTRQVRAIARVATAVTRGDLNLKID
VDASGEIQELQDYINKMIANLRDTTIANKEQDWLKGNLARISALMQGRRDLEDVASLIMS
ELTPVVSAQHGAFFLAMPLVDGEDKNAAGDDQYELRMLGSYGYSMGSMPTSFQPGEALVG
TAAEEKRTILVENAPSGYLKISSGLGEAPPAQVIVLPVLFEGSVLGVIELASFTPFTQIQ
KDFLNQIAEMIATSVNTISVNTKTELLLAQSQELTEQLRERSAELEQRQKALQASNAELE
EKAELLAQQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLL
ILAKLLADNAEGNLSPKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALV
QLVDYVEATFRPLTAEKGLDLSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSV
ELVIRPARDDVPQRIREQLLETGSLTDPDAELIAFSVTDTGIGIASSKMRVIFEAFKQAD
GTTSRKYGGTGLGLSISREIAQLLGGEIHAQSETGRGSTFTLYLPLHPSELPPQGYQQQL
PALEAGDLMTSSDLAELSDVEVDTPAEVKSYRDAQNGPAALFRRRRRMPELPRPAQPEQW
TPAEPETAPKPQRGIRFGGQKVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLE
QHDDVAVVLMDIMMPEMDGYATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDY
VTKPVDPDHLLAVMDQWMRGE
NT seq
5466 nt
NT seq
+upstream
nt +downstream
nt
gtggagtctggcgcagcgacgcgtggcacgaagacgcgcgcgaaaggcggacagtccccg
agcaaccagggaaaaacacgcaatggcaccacagaggtggacacggcagccctgaaccgt
ctgatggcggccctggtgtcgatgcgggacggaaacttccgcaagcggctcacggtgtcc
ggggacggcgtgatggccgagatcgcggccgttttcaacgaagtggccgaccgcaatctg
catctgacgggcgagctggcccgggtgcggcggatggtgggccgtgagggcaagctcacc
gagcggctggagaccggggcctgcgagggctcgtggtcgacggcgatcgacaactcgaac
gccctggtggacgacctggtgcggccggtttccgaggtcagccgggtgctgtccgcggtg
gccgagggtgatctgtcaccgcggatggagttgcggacgcaggccccggacgggaacggg
catccgctgcgcggagagttcctgaaggtcgggcggacggtcaacaacctggtcgaccag
ctgtcgacgttcaccgacgaggtcacgcgtgtggccagtgaggtgggcaccgagggcaag
ctgggcgggcaggcgcgcgtacgtggcatgtcgggttcgtggcgggatctcacggactcc
gtcaacacgatggcgtaccggctgacggcccaggtgagggacatcgcgctggtgacgacg
gcggtcgccaagggtgatctgtcgcggaaggtcactgttcaggtggccggcgagatgctg
gagctgaagaacaccgtcaacacgatggtggaccagctgtcggcgttctcctccgaggtg
acccgggtggcccgagaggtgggcaccgagggtgcgctgggcgggcaggcgcaggtgccc
ggtgtggacggtgtgtggaaggagctcaccgactccgtgaacaccatggccgggaacctc
acggcccaggtgcgcggcatcgcggaggtgacgacggcggtcgccaacggtgacctgtcg
cggaaggtgaccgtgcaggcgcggggcgaggtcgcgcagctcgccgagacgatcaaccag
atgaccgagacgctgcggatcttcgcggacgaggtcacgcgtgtggccaacgaggtcggg
gccgaggggcggctcggtggtcaggcgaacgtgccgggtgcggcggggacgtggaaggac
ctcaccgattcggtgaacacggtcttccggaatctgaccactcaggtgcgggacatcgcc
gccgtgacgacggccgtggccaacggtgatctgtcgcagaaggtcaccgtggacgtggcc
ggcgagatgctcgagttgaagaacaccgtcaacacgatggtcgaccagctgtccgccttc
ggtgcggaagtgacccgtgtggcacgtgaaatcggtgtcgagggtgagctgggcggtcag
gcgcaggtgccgggtgtggccgggacatggaaggacctgacggactccgtcaacacggcg
ttccggaacctcaccggacaggtgcggaacatcgcgcaggtgacgacggcggtggccaac
ggtgacctctcgcagaaggtcacggtcgacgtctccggcgagatgctcaagatgaagaac
accgtgaacacgatggtggaccagctgtcgagcttcgccgaccaggtgacccggatggcc
cgggacgtgggcacggagggccgtctcggcggtcaggcccgggtggacggcgtgtccggt
acgtggaaggagctcaccgactccgtcaactccatggccgggaacctcacctcccaggtg
cgcaacatcgcgcaggtgacgacggccgtggcccggggcgacctgtcccagaagatcgac
gtggacgcgcgcggggagatcctggagctgaagaacaccatcaacacgatggtcgaccag
ctctcggccttcgccgaccaggtgacccgggtcgcccgtgaggtgggtacggacggccgg
ctgggcggtcaggcgcaggtgcccggggtcgccggtgtgtggcgcgacctgacggactcc
gtgaacggcatggccggcaacctcaccgcccaggtgcgcaacatcgcccaggtcgcgacc
gcggtggcccggggtgatctgtcgcagaagatcgacgtggacgcgcgcggggagatcctg
gagctgaagaacaccctcaacacgatggtggatcagctgtcgtcgttcgcccaggaggtc
acgcgtgtggcccgtgaggtgggaacggagggcatcctgggcggccaggccgaggtgcag
ggtgtctccggcacctggaaggacctcacccagtccgtgaacggcatggcgaacaacctg
accatccaggtgcgcaacatcgccgaggtcacgaccgcggtcgcccggggcgatctgtcg
aagaagatcaccgtcgacgccaagggcgagattctcgagctcgtcacgaccgtcaacacg
atggtggaccagctgtcctccttcgccgagcaggtgacccgggtggcccgtgaggtgggc
accgagggcatcctgggcggacaggcgcacgtgccgggtgtcacgggcatctggaaggac
ctgagcgacaacgtcaacctgatggccaagaacctcaccacgcaggtgcggaacatctcc
caggtctcggcggcggtcgccaacggtgacctgacgcgccaggtcaccatcgaggcgcgc
ggtgaggtcgcgcagctcgccgacaccatcaacacgatggtgaagacgctgagttcgttc
gcggagcaggtcaccaaggtggcccgtgaggtgggtacggacggcatcctcggcgggcag
gcgcatgtgccgggtgtggccggtacgtggaaggacctgaccgagtccgtgaacggcatg
gcgtccaacctgaccgggcaggtgcgcaacatcgccatggtgaccacggccatcgccaag
ggtgacctgacgaagaagatcgacatcgacgcgcgcggcgagatcctggagctgaagacg
accatcaacacgatggtcgaccagctgtcctccttcgccgaggaggtcacccgggtcgcc
cgcgaggtgggcacggaggggcagctcggcgggcaggcacgcgtgcgtgacgtcgacggg
acgtggcgcgacctgaccgagtccgtgaacgagatggccgggaacctgacccggcaggtg
cgtgccatcgcgcgcgtggcgaccgcggtgacccgtggcgacctgaatctgaagatcgac
gtggacgcgtccggggagatccaggagctccaggactacatcaacaagatgatcgccaac
ctgcgtgacaccacgatcgccaacaaggagcaggactggctcaagggcaacctggcccgg
atctccgcgctgatgcagggccgccgcgacctggaggacgtggcctcgctgatcatgagc
gagctgacgccggtggtgtccgcgcagcacggcgcgttcttcctggcgatgccgctcgtc
gacggcgaggacaagaacgccgcgggcgacgaccagtacgagctgcgcatgctcggctcg
tacggctactcgatgggctccatgccgacatcgttccagccgggtgaggcgctggtcggg
acggccgccgaggagaagcgcacgatcctggtggagaacgcgccgagcggctatctgaag
atctcctcggggctcggcgaggcgccgcccgcgcaggtgatcgtgctgccggtcctgttc
gagggcagcgtgctcggtgtcatcgagttggcctccttcactccctttacgcagatccag
aaggatttcctcaaccagatcgccgagatgatcgcgacgagcgtcaacaccatctccgtc
aacaccaagaccgagctgctgctggcgcagtcgcaggagctgaccgagcaactgcgtgag
cggtcggcggagttggaacagcggcagaaggccctccaggcgtccaacgccgaactggag
gagaaggccgagctgctggcccagcagaaccgcgacatcgaggtgaagaacaccgagatc
gaggaggcgcggcaggttctggaggagcgcgccgagcagctcgccgtgtcgatgcgctac
aagagcgagttcctggcgaacatgtcgcacgagctgcgtacgccgctcaactcgctgctg
atcctggccaagctgctcgccgacaacgccgaggggaacctctccccgaagcaggtcgag
ttcgccgagaccatccacggtgccggttccgacctgctccagctcatcaacgacatcctc
gacctgtcgaaggtcgaggcgggcaagatggacgtctccccgacgcgtatcgcgctcgtc
cagctcgtggactacgtggaggccacgttccgcccgctgaccgcggagaagggcctggac
ctgtcggtgcgggtgtcgccggagctgcccgccacgctgcacaccgacgagcagcggctg
ctgcaggtgctgcgcaacctgctgtcgaacgcggtgaagttcaccgactcggggtcggtg
gagctggtcatcaggccggcgcgggacgacgtgccgcagcggatccgggagcagcttctg
gagaccgggtcgctgaccgacccggacgccgagctgatcgcgttctccgtgacggacacc
gggatcggtatcgcctccagcaagatgcgggtgatcttcgaggcgttcaagcaggccgac
ggcacgaccagtcgcaagtacggcggtacgggcctcgggttgtccatctcgcgggagatc
gcccagctgctcggcggtgagatccacgcgcagagcgagacgggccgcggctcgacgttc
acgctgtatctgccgctgcaccccagcgaactgccgccgcagggctaccagcagcagctg
cccgccctggaggccggtgacctgatgacgtcgtccgaccttgccgagctgtccgatgtg
gaggtcgacacgcccgccgaggtgaagtcgtaccgcgatgcgcagaacgggccggcagcc
ctgttccggcggcgccgcaggatgcccgagctgcctcgccccgcgcagccggagcagtgg
acgcccgccgagccggagacggcgccgaagccgcagcgcggcatccggttcggcggccag
aaggtcctgatcgtcgacgacgacatccgcaacgtcttcgcgctgaccagtgtcctggag
cagcacggcctgtccgtgctgtacgccgagaacggccgtgagggcatcgaggtgctggag
cagcatgacgacgtggcggtcgtcctgatggacatcatgatgcccgagatggatgggtac
gcgacgaccacggcgatccgcaggatgccgcagttcgccgggctgccgatcatcgcgctg
accgcgaaggccatgaagggcgaccgggagaaggcgatcgagtcgggtgcctccgactac
gtcacgaagccggtcgatcccgatcacctgctcgcggtgatggatcagtggatgcgaggg
gaatga
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