Streptomyces janthinus: RI060_13835
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Entry
RI060_13835 CDS
T09385
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sjn
Streptomyces janthinus
Pathway
sjn03420
Nucleotide excision repair
sjn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sjn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RI060_13835
03430 Mismatch repair
RI060_13835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sjn03400
]
RI060_13835
Enzymes [BR:
sjn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RI060_13835
DNA repair and recombination proteins [BR:
sjn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RI060_13835
MMR (mismatch excision repair)
Other MMR factors
RI060_13835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WND18350
LinkDB
All DBs
Position
complement(3084245..3087766)
Genome browser
AA seq
1173 aa
AA seq
DB search
MPARITDPEQLKELLGIPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQ
VAPEQVLGLTFTNKAAAELAERVRKALVKAGVTDPDAIDPDNPPGEPVISTYHAFAGRLL
ADHGLRIGLEPTSRLLADATRFQLAARVLREAPGSYPALTRSFPDLVGDLLALDAELAEH
LVRPEALRAYDAELLLTLRGVKLSNADLRKVPDAAAARRELAELVTRYRAAKRERDLLDF
GDQIALSARLAGIPEVGRVLRDEFRVVLLDEYQDTSVAQRVLLAGLFGEGTGHPVTAVGD
PCQAIYGWRGASVANLDDFPEHFARADGRPATRQALSENRRSGGRLLDLANGLAEPLRAL
HAGVEALRPAPGAERDGIVRCALLRTHAEEIDWAADSVAHLVRTGTAPGEIAVLCRTATD
FSEIQGALVARDIPVEVVGLSGLLHLPEIADLVAVCEVLQDPGANASLVRLLTGPRWRIG
PRDLALLGRRARLLVTHARVEGDDDPDRRLAEAVEGVDPAEVISLADALDTFLETPLDGR
GDDDGLPFSPDARVRFARLATELRDLRRSLSDPLMDVLHRVLAVTGLEVELSASPHALAA
RRRETLSNFLDVAASFAAGDNEASLLAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHK
SKGLEWDVVVVPGLVTGTFPSSQGREKWTSQGKVLPHELRGDADTLPDITSWDAKGLKAF
HEAMKEHQHTEELRLGYVTFTRPRSLLLGSGHWWGPTQKKRRGPSAFLQDLYEHCAAGYG
EIEAWADEPAEDEENPALHQATADQVWPLPLDEAALARRRAAAETVLAHLEDLASHEDWH
PAAVHDPDAFDDPDWPPSPEDDEPPYDEPDPFDFDEGPVHDAPFHEAPFHEGPFAAEAAD
GDAPPTDGPTVPRQAGPPEPPDPHRHRRPHLTPEEARTIASWDRDLDALTGELLRARDSV
TEVPLPTSLTASQLLLLAADPDGLAQELARPLPRPPQPAARRGTRFHAWVEARFEELTLP
LLEPEELPGSEAEIADERDLEALKDAFEQTEYAHRTPYRVEAPFQLSLAGRVVRGRIDAV
YKEGDGEGTTYEIVDWKTNRSRTADPLQLAVYRLAWAEQQCVPAESVTAAFLYVRSGEVV
RPDDLPDRAALERLLSEEPPGEEPHSEDVSAGR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
gtgccagcccgtatcaccgatcccgaacagctcaaggagctcctcggcatcccgttcacc
ccggagcagacggcctgcatcaccgcgccgcccgccccgcaggtgatcgtggccggagcc
ggctcgggcaagacgacggtgatggcggcacgcgtggtgtggctggtcggcaccggccag
gtcgcccccgagcaggtgctcggcctcaccttcaccaacaaggccgccgccgaactcgcc
gagcgcgtccgcaaggcgctggtcaaggccggcgtcaccgaccccgacgccatcgacccg
gacaaccctccgggcgagccggtgatctccacgtaccacgccttcgcgggccgtctgctg
gccgaccacggtctgcgcatcgggctcgagcccacgtcccggctgctcgccgacgcgacc
cgcttccaactcgccgcgcgcgtcctgcgcgaggcccccgggtcctatccggccctgacc
cgttccttcccggacctggtcggcgatctcctcgccctcgacgccgaactcgccgagcac
ctcgtccgcccggaggcgctgcgcgcgtacgacgccgaactgctgctgaccctgcgaggc
gtcaagctcagcaacgccgacctgcgcaaggtccccgacgcggccgccgcccgccgtgaa
ctggccgagctggtgacccgctaccgggcagccaagcgcgagcgggacctgctcgacttc
ggcgaccagatcgccctgtcggcccggctcgccgggatccccgaagtgggccgcgtcctg
cgcgacgagttccgggtggtcctgctcgacgagtaccaggacacctcggtcgcccaacgc
gtcctcctggcgggcctgttcggtgagggcaccggccatccggtcaccgccgtcggcgac
ccctgccaggcgatctacggctggcgcggcgcctccgtcgccaacctcgacgacttcccc
gagcacttcgcccgcgccgacggccgccccgcgacccgccaggcgctcagcgagaaccgc
cgcagcggcggccgcctcctcgacctcgccaacggcctcgcggagcccctgcgcgccctg
cacgcgggcgtggaggcacttcgccccgcccccggggccgaacgcgacggcatcgtgcgc
tgcgccctgctgcgcacccatgccgaggagatcgactgggccgccgactccgtcgcccac
ctcgtgaggaccgggacggcacccggcgagatcgcggtcctgtgccgcacggcgaccgat
ttctccgagatccagggcgcactggtggcccgggacatcccggtcgaggtcgtcggcctg
tccgggctgctgcacctgcccgagatcgccgacctcgtcgccgtgtgcgaggtcctccag
gaccccggcgccaacgcctccctggtgcgcctgctgaccggcccgcgctggcgcatcggg
ccgcgtgacctcgccctgctggggcggcgcgcccggcttctcgtgacccacgcgcgggtg
gagggcgacgacgacccggaccgccgcctcgccgaggccgtcgagggcgtcgacccggcc
gaggtgatctccctcgcggacgccctcgacaccttcctggagacgccgctggacggccgc
ggggacgacgacgggctgcccttctcgccggacgcgcgcgtgcgcttcgcccgcctggcc
accgaactgcgcgacctgcgccgctccctgtccgacccgctgatggacgtcctgcaccgg
gtactcgccgtcaccggcctggaggtggagctgtcggcgtccccgcacgccctggcagcg
cgccgccgcgagacactctccaacttcctggacgtcgccgcctccttcgccgccggcgac
aacgaggccagtctgctcgccttcctcggcttcctgcgcaccgccgcccagtacgagaag
ggcctcgacaacgccctccccggcggcgagaacaccgtcaaggtgctcaccgcccacaag
tccaagggcctggaatgggacgtcgtggtcgtccccggtctggtcaccggcaccttcccc
agcagccagggccgcgagaagtggacctcccagggcaaggtcctgccgcacgagctgcgc
ggtgacgccgacaccctccccgacatcacctcctgggacgccaagggcctcaaggccttc
cacgaggccatgaaggagcaccagcacaccgaggaactccgcctcggctacgtcaccttc
acccgcccccgctccctgctcctgggctccggccactggtggggacccacccagaagaag
cgtcgcggaccctccgcgttcctccaggacctctacgagcactgcgcggccgggtacggc
gagatcgaggcctgggcggacgaacccgccgaggacgaggagaacccggccctgcaccag
gccaccgccgaccaggtgtggcccctgcccctggacgaggcggccctggcccgccgccgc
gccgccgccgagaccgtcctggcccacctggaggacctcgcgtcccacgaggactggcac
ccggcggccgtgcacgacccggacgcgttcgacgacccggactggccaccgtcccccgag
gacgacgagcctccgtatgacgagccggacccgttcgacttcgacgaaggccccgttcac
gatgcgccctttcacgaagcccccttccacgaaggccccttcgcagcagaggcggcggac
ggggacgcaccgccgacggacggccccacggtcccccgccaggctgggccgccggaaccc
ccggacccacaccgacaccgcaggccgcacctcaccccggaggaagcccgcaccatcgcc
tcctgggaccgcgacctcgacgccctcaccggcgagcttctgcgtgcccgcgacagcgtc
accgaggtccccctccccacctccctcacggcctcccagctgctgctcctggccgccgac
ccggacggcctcgcccaggagctggcccgccccctgccccgcccgccccagcccgccgcc
cgtcgcggcacccgcttccacgcctgggtcgaggcccgcttcgaagagctgacgctgccc
ctgctggagccggaggagctgcccggcagcgaagcggagatcgccgacgaacgggacctg
gaggccctcaaggacgccttcgagcagaccgagtacgcgcaccgcacgccctaccgggtg
gaggcccccttccagctctcgctcgccggccgcgtcgtacgtggccgcatcgacgccgtc
tacaaggagggcgacggcgagggcacgacgtacgagatcgtcgactggaagaccaaccgt
tcacgcaccgcggaccccctccagctcgccgtctaccgcctggcctgggccgagcagcag
tgcgtacccgcggagtccgtcacggccgcgttcctgtacgtgcgcagtggcgaggtcgtc
cgccccgacgacctgccggaccgcgcggcgctggagcggctgctgagcgaggagccgccc
ggtgaggaaccgcactccgaggacgtcagtgcgggccgatag
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