Streptomyces violaceus: RI060_17640
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Entry
RI060_17640 CDS
T09385
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sjn
Streptomyces violaceus
Brite
KEGG Orthology (KO) [BR:
sjn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sjn03016
]
RI060_17640
Enzymes [BR:
sjn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
RI060_17640
Transfer RNA biogenesis [BR:
sjn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
RI060_17640
Prokaryotic type
tRNA splicing ligases
RI060_17640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WND19056
UniProt:
A0ABY9UFL9
LinkDB
All DBs
Position
complement(3876753..3877946)
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AA seq
397 aa
AA seq
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MSYVEVPGAKVPIRMWADPASVEEGALQQLRNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMQGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSKVEQVIPVGRGMHDSAVDPG
RLHGFGTAGWEDFWGRFDGVAEAVKFRAERATKQMGTLGGGNHFVEICTDTAGSVWLMLH
SGSRNIGKELAEHHIGIAQKLPHNQGLVDRDLAVFVADTPQMTAYRNDLFWAQEYAKYNR
SIMMALLKDVVRKEFKKAKPAFEPEISAHHNYVAEERYDGMDLLVTRKGAIRAGSGEYGI
IPGSMGTGSYIVKGLGNAKSFNSASHGAGRRMSRNAAKRRFSTKDLEEQTRGVECRKDSG
VVDEIPGAYKPIEQVIDQQRDLVEVVAKLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatgtagaggtacctggtgcgaaagtaccgatccggatgtgggccgaccccgcc
tcggtcgaggagggcgcgctccagcagctccggaacgtcgccacgctgccgtggatcaag
ggcctggccgtcatgcccgacgtgcactacggcaagggcgcgacggtcggctcggtcatc
gcgatgcagggtgcggtctgcccggcggcggtgggagtcgacatcggctgcggaatgtcg
gcggtgaagacgtccctgacggcgaacgacctgcccggggatctgtcgcggctgcggtcg
aaggtcgagcaggtgattccggtggggcggggcatgcatgacagtgccgtcgacccgggg
cggctgcacgggttcggtacggccgggtgggaggacttctgggggcggttcgacggggtc
gccgaagcggtcaagttccgtgccgagcgcgccacaaagcagatgggaacgctcggcgga
ggcaaccactttgtcgaaatctgcacggatacggccggttctgtctggctgatgctgcac
tccggttcccggaacatcggcaaggaactggccgagcaccacatcggcatcgctcagaag
ctcccgcacaaccagggtctggtcgaccgggacctcgccgtcttcgtggcggacaccccg
cagatgacggcgtaccgcaacgacctgttctgggcgcaggagtacgcgaagtacaaccgc
tcgatcatgatggcgctcctgaaggacgtggtccgcaaggagttcaagaaggcgaagccg
gccttcgagccggagatcagcgcgcaccacaactacgtggccgaggagcgctacgacggg
atggacctgctcgtgacccgcaagggcgcgatccgggccggctccggcgagtacgggatc
atccccggctccatgggcacgggttcgtacatcgtgaagggcctcggcaacgccaagtcc
ttcaactcggcctcgcacggcgccggtcggcgcatgagccgcaacgcggcgaagcggcgc
ttctcgacgaaggacctggaggagcagacccggggcgtggagtgccgcaaggactccggc
gtcgtggacgagatcccgggcgcctacaagcccatcgagcaggtcatcgaccagcagcgg
gacctggtggaggtcgtggcgaagctgaagcaggtcgtctgcgtgaagggctga
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