Streptomyces janthinus: RI060_25410
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Entry
RI060_25410 CDS
T09385
Name
(GenBank) RNA polymerase sigma factor SigF
KO
K03090
RNA polymerase sigma-B factor
Organism
sjn
Streptomyces janthinus
Brite
KEGG Orthology (KO) [BR:
sjn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sjn03021
]
RI060_25410
Transcription machinery [BR:
sjn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RI060_25410
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r3
Sigma70_r2
Sigma70_r4_2
Sigma70_ECF
HTH_23
MarR_2
HTH_24
HTH_Crp_2
HTH_3
HTH_31
HTH_IclR
MarR
HTH_37
GerE
DUF7343
Motif
Other DBs
NCBI-ProteinID:
WND20468
LinkDB
All DBs
Position
complement(5524712..5525638)
Genome browser
AA seq
308 aa
AA seq
DB search
MEDIMSPRLDASRTQKATSTPPPEHLDPIEQDETLVTQDDLLAGLPDIPPYEQVDAVDAR
ALSKTLFERLEALEEGTHEYSYVRNTLVELNLALVKFAASRFRSRSEPMEDIIQVGTIGL
IKAIDRFELSRGVEFPTFAMPTIVGEIKRFFRDTSWSVRVPRRLQELRLDLAKAGDELAQ
KLDRAPTVTELAERLGLSKDEVVEGMAASNAYTASSLDAQPEEDDSEGALADRIGYEDHG
LEGIEYVESLKPLIAELPPRDRKILSLRFVAGLTQSEIGEELGISQMHVSRLLSRTLVRL
RKGLTVEE
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atggaggacatcatgtcaccccggctcgacgcatcgcgtacccagaaagcgacgtcgaca
ccccctccggaacatctggatcccatcgagcaggacgagacgctcgtcacacaggacgac
cttctcgccggacttccggacatccccccgtacgagcaggtcgacgcggtcgacgcacgg
gctctctccaagaccctcttcgagcgcctcgaagcgctggaggaaggcacgcacgagtac
tcgtacgtccgcaacacgcttgtcgaactgaacctcgcgctggtcaagttcgccgcttcc
cggttccgctcccgcagcgagccgatggaggacatcatccaggtcggcaccatcggcctg
atcaaggcgatcgaccggttcgaactctcccggggtgtcgagttccccacgttcgcgatg
ccgaccatcgtcggcgagatcaagcgcttcttccgcgacacctcgtggtccgtgcgcgtt
ccgcggcggctccaggagctccggctcgacctggccaaggccggtgacgagctggcgcag
aagctggaccgcgccccgacggtgacggaactggccgagcgcctgggcctgtccaaggac
gaggtcgtcgagggcatggccgcctcgaacgcctacaccgcctcctcgctggacgcccag
ccggaggaggacgactccgagggcgcgctcgcggaccgcatcggctacgaggaccacgga
ctcgagggcatcgagtacgtcgagtcgctgaagccgctgatcgccgaactcccgccgcgc
gaccggaagatcctgtccctgcgcttcgtcgcgggtctgacgcagtcggagatcggcgag
gaactgggcatctcgcagatgcacgtgtcgcgactgctgtcgcggacgctggtacggctg
cgcaagggcctgaccgtcgaggagtga
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