Streptomyces janthinus: RI060_28085
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Entry
RI060_28085 CDS
T09385
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sjn
Streptomyces janthinus
Pathway
sjn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sjn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RI060_28085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjn03019
]
RI060_28085
03009 Ribosome biogenesis [BR:
sjn03009
]
RI060_28085
Enzymes [BR:
sjn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RI060_28085
Messenger RNA biogenesis [BR:
sjn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RI060_28085
Ribosome biogenesis [BR:
sjn03009
]
Prokaryotic type
rRNA processing factors
RI060_28085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
WND20960
LinkDB
All DBs
Position
6149771..6153868
Genome browser
AA seq
1365 aa
AA seq
DB search
MLEPTEPIEGSEQNTPSDTLPPRRRRRAASRPAGPPVGGTSDAPVETVAPAIPAADPDEL
AAEVVDAGEEAAAGADETSEAAQAAEAVESAEEAAPAARKRRRAVRRASAPAGTPEATEA
AETVLPVTATAPADSEASEQAEVSAPAASAAVSEDAAPRRTRRRATRTVTSPAAAPAETS
GTAPAPAASDDSEQAAATGGPAEEAEAAASAEVSEDAAPRRTRRRASRRASAPAGAPEGN
AEEAKAPMTENPAAEPARATEAPASEAAPAPEAPAEATPAAEPAEEAAPRRRRRVARRAA
GGFAEPAQTSKSSRASKSAAAATDTAVSESESAARPARPAVAVFQAPVFTEPQFQTPERA
AAAAAAEAAVTEEPEEPEESASAEAPREEQPGGSRRRRRRRGAGDEPEAPAVEAAAEQSA
DDESEDAEDSADGDEQDESEGSGSRRRRRRGGRRRRRGDSADSDETTDDESEQATGQDAE
DTAEEDEESDEAADRDESSGGGGSASSRRRRRRRRRAGDSGTEAEPSEDDPERTVVKVRE
PRPPRERGAEPSDEVQSIKGSTRLEAKKQRRREGREQGRRRVPIITEAEFLARREAVERV
MVVRQHGDRTQIGVLEDNVLVEHYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFIDIGKGR
NAVLYAGEVNFEALGMANGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYL
VYVPEGSMTGISRKLPDTERARLKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQG
QWEDIQKKAKNGGSSNAPSLLYGEPDMTVRVVRDIFNEDFSKVVVSGDDAWSTIHGYVSH
VAPDLAERLSKWTSEVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMIVVDVNTG
KFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLEC
LGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPTAVGGGG
KRKKRARAGAAEQPHVHEAAAVETAEQEAETEAEVGAEIAEPIALPEPSFEPDEELFSSA
AEAEAAASRGRTRRRASRRASAPAGSPRGEAAEPQARKGRNKAEQAEAEVPTAQDVTVAE
EVARPVQPEPAAEAHAEPMAVEDPVVEAPAAEEAAPKGRGRRRATRKVSAPAGSPAGAEA
TVVTVAETAPAAPEATEAPEQDGQPERAAEAPAESAAPARPRRRAVRKPTASTASEETAV
VVVSSAAEEPSDAGAPAAEATAETAEAAEEPAPAKKTARKTAKKATAKKAATKKTAAKKT
AAKKTTAKKAATTKTAAKKTASKKTVAAEQSVSSAASVSASTDEG
NT seq
4098 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaaccgaccgaacccattgagggttccgaacagaacactcccagcgacaccctg
ccgccccgccggcggcggcgtgccgcgtcccgcccggcgggtccccccgtcggcggcacc
tccgacgccccggtggagaccgtcgcgccggccataccggccgccgatcccgacgaactc
gcggccgaggtcgtagacgccggcgaggaagccgctgccggagcggacgagacgtccgag
gccgcgcaggccgccgaagccgtcgagagcgccgaagaggccgcgcccgccgctcgcaag
cggcgccgcgcggtccgtcgcgcatccgcacctgccgggactccggaggccacggaggcc
gccgagaccgtgctcccggtgaccgccaccgctccggccgactccgaggcgtctgagcag
gccgaggtctccgcccccgccgcgtccgccgcggtgtccgaggacgccgctccccggcgt
acccggcgtcgtgcgacgcgcacggtgacctcgcctgctgcggctccggcggagacgtcc
gggacggcgccggcaccggccgcgtccgatgactcggagcaggctgccgcaaccggtggg
cccgccgaagaggccgaggccgccgcatccgccgaggtctccgaggacgccgctccgcgt
cggacccgtcgccgtgcctcgaggcgggcgtccgcgcccgccggggcgccggaaggcaac
gccgaggaggcgaaggcacctatgaccgagaaccccgccgccgagcccgcccgcgccacc
gaggcccccgcctccgaggccgcgcccgcgcccgaggcccccgccgaggccacccctgcc
gcggaacccgccgaggaagccgccccgcggcgtcgtcgtcgggtcgcccgcagggccgcc
ggcggtttcgccgagcctgcccagacctccaagtcctccagggcctcgaagtccgccgcc
gcggccactgacacggccgtgagtgagagcgagtcggccgcgcgccccgcgcgtccggcc
gtcgccgtgttccaggcgcccgtgttcaccgagccccagttccagacgccggagcgggcc
gctgccgctgccgccgccgaggcggccgtgaccgaggagcccgaggagcccgaggagtca
gcgtcggctgaggccccccgggaggagcagcccggcgggtcgcgccgccggcgtcgccgc
cggggtgcaggcgacgagcccgaggccccggccgtcgaggccgctgccgagcagagcgcc
gacgacgagtcggaggacgccgaggactccgccgacggcgatgagcaggacgagtccgag
gggagcggctcgcgccgccgccgtcgccggggcggtcgccgccgtcggcgtggcgactcc
gccgactccgacgagaccacggacgacgagtccgagcaggccaccggccaggacgccgag
gacacggccgaggaggacgaggagtccgacgaggccgccgaccgtgacgagtcgtccggc
gggggcggctccgccagcagccgccgtcgccgtcgccgccgtcgccgtgccggtgacagc
ggcaccgaggccgagccctccgaggacgacccggagcgcacggtcgtcaaggtccgcgag
cctcgtcccccgcgggaacggggtgcggagccgtccgacgaggtgcagtccatcaagggc
tcgacccgtctggaggccaagaagcagcgccgccgcgaaggccgcgagcagggccgccgg
cgcgtcccgatcatcaccgaggccgagttcctggcccggcgcgaggccgtcgagcgcgtg
atggtcgtccgccagcacggcgaccgtacgcagatcggcgtcctcgaggacaacgtgctc
gtcgagcactacgtcaacaaggagcagtcgacctcgtacgtcggcaacgtctacctgggc
aaggtccagaacgtgctgccgtcgatggaggccgccttcatcgacatcggcaagggccgc
aacgccgtgctgtacgccggtgaggtcaacttcgaggcgctgggcatggccaacgggccg
cggcgcatcgagtccgccctgaagtccggccagtccgtgctcgtccaggtgacgaaggac
cccatcggacacaagggcgcccgtctgaccagccaggtctccctcccgggccgctacctc
gtgtacgtccccgagggctccatgaccggcatcagccgcaagctgcccgacaccgagcgg
gcccggctgaagaccatcctcaagaagatcgtccccgaggacgcgggcgtcatcgtgcgc
accgccgccgagggcgcgagcgaggacgagctgcgccgggacgtcgagcggctgcagggg
cagtgggaggacatccagaagaaggccaagaacggcggcagctcaaacgcaccgtcgctg
ctgtacggcgagccggacatgaccgtccgggtcgtgcgcgacatcttcaacgaggacttc
tccaaggtcgtcgtcagcggtgacgacgcctggtcgaccatccacgggtacgtctctcac
gtcgcccccgacctggccgagcggttgtcgaagtggacctccgaggtcgacgtcttcgct
acctaccggatcgacgagcagctcgccaaggccctcgaccgcaaggtctggctgcccagc
ggcggctcgctggtgatcgaccggaccgaggcgatgatcgtcgtcgacgtcaacaccggc
aagttcaccggtcagggcggcaacctcgaggagaccgtcaccaggaacaacctggaggcg
gccgaggagatcgtgcgccagctgcggctgcgcgacctcggcggcatcatcgtcatcgac
ttcatcgacatggtgctggagtccaaccgggacctggtgctgcggcgcctgctggagtgc
ctgggccgggaccggaccaagcaccaggtggcggaggtgacctcgctggggctcgtgcag
atgacccgcaagcgggtcgggcaggggctgctggagtccttctccgagacctgcgtccac
tgcaacggccgcggtgtcatcgtgcacatggagcagccgacggccgtcggtggcggcggc
aagcgcaagaagcgcgcgcgtgccggtgccgccgagcagccgcacgtgcacgaggcggcc
gccgtcgagaccgccgagcaggaggcggagaccgaggcggaggtcggtgccgagatcgcc
gagccgatcgccctgcccgagccgtccttcgagcccgacgaggagctgttcagcagcgcc
gccgaggcggaggccgcggcctcgcgtgggcgtacacggcgccgggcgagccggcgggcg
tccgctccggcgggttcgcctcgcggtgaagcggcggagccgcaggccaggaagggcagg
aacaaggccgagcaggccgaggccgaggtgccgacggctcaggacgtgaccgtcgccgag
gaggtcgcccgtccggtgcagccggagccggccgccgaggcgcacgccgagccgatggcc
gtcgaggacccggtcgtcgaggccccggccgccgaggaggccgcgcccaagggccgtggc
cgtcggcgggcgacgcgcaaggtgtccgcgccggccggttctccggcgggggcggaggcg
accgtggtgacggttgccgagaccgcacccgccgcgcccgaggccacggaggcgcccgag
caggacggacagcccgagcgggctgccgaggcgcccgccgagagcgccgccccggcccgc
ccgcggcgccgtgcggtgcgcaagcccaccgcgtccaccgcgtccgaggagacggccgtc
gtggtcgtgtcgtcggccgcggaggagccgtcggacgccggagccccggcagccgaggcg
accgcggagaccgccgaggccgccgaggagccggctccggccaagaagacggcccgcaag
acggccaagaaggccacggcgaagaaggccgccaccaagaagaccgcggcgaagaagacc
gcggccaagaagacgacggccaagaaggcggcgaccaccaagaccgccgccaagaagacc
gcgtcgaagaagaccgtggcggcggagcagtccgtgtcctccgcggcctccgtctccgcc
tccaccgacgagggctga
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