KEGG   Streptomyces violaceus: RI060_33190
Entry
RI060_33190       CDS       T09385                                 
Name
(GenBank) DEDDh family exonuclease
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
sjn  Streptomyces violaceus
Pathway
sjn03030  DNA replication
sjn03430  Mismatch repair
sjn03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:sjn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RI060_33190
   03430 Mismatch repair
    RI060_33190
   03440 Homologous recombination
    RI060_33190
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sjn03032]
    RI060_33190
   03400 DNA repair and recombination proteins [BR:sjn03400]
    RI060_33190
Enzymes [BR:sjn01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     RI060_33190
DNA replication proteins [BR:sjn03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     RI060_33190
DNA repair and recombination proteins [BR:sjn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     RI060_33190
SSDB
Motif
Pfam: RNase_T BRCT Rv2179c-like PTCB-BRCT RNase_H_2 AP_endonuc_2 DNA_pol_A_exo1
Other DBs
NCBI-ProteinID: WND21918
UniProt: A0ABY9UGD2
LinkDB
Position
complement(7260379..7261368)
AA seq 329 aa
MLDDLTTAVPSPTSWPAAYPKGYAVVDVETTGLARDDRIISAAVYRLDARGEVEDHWYST
VNPERDPGPVWIHGLTSEALEGAPLFQDIAEEFTTRLEGRVLVAHNAVFDWQMIAREYAR
AKREAPVRQRLCTIALSKELGLPLPNHKLESLAAHFGVVQQRAHHALDDARVLAEAFRPS
LRAAAESGVRLPLLECRPLTEWSDRPAPRIGQQAGHGGYRPSSWRPARKRPACPYPNPGR
YEAGGRLRQGMRVAFSGDTSVERDLLEDRATEAGLHVATSLSRLTSLLVTNDPDSGTSKV
VKARQFGTPVVDEAAFGQLLADVEPASEG
NT seq 990 nt   +upstreamnt  +downstreamnt
atgctcgatgacctgacgaccgcagtgccctctcccacgtcatggccggccgcgtatccc
aagggatacgcggttgttgacgtggagaccacaggtctggcccgggacgatcgcatcatc
tccgcggccgtctaccggctcgacgcgcgcggcgaggtcgaggaccactggtactcgacg
gtcaacccggagcgtgaccccggccccgtgtggatccacggactgacgagcgaggcactc
gagggcgcgcccctcttccaggacatcgccgaggagttcacgacccggctcgaggggcgg
gtgctcgtcgcgcacaacgccgtcttcgactggcagatgatcgcccgggagtacgcgcgc
gcgaagcgcgaggcgccggtgcggcaacggctgtgcaccatcgcgctctccaaggaactc
gggctcccgctgcccaaccacaagctggagtccctcgccgcgcacttcggagtcgtccag
cagcgggcgcaccacgcgctggacgacgcgcgcgtactggccgaggcgttccggcccagc
ctcagggccgcggcggagagcggcgtgcggctgccgctgctcgagtgccggccgctgacc
gaatggtcggaccgtcccgcgccccgcatcggacagcaggccggccacggcggctaccgg
ccgagcagctggcgccccgcccggaagcggcccgcctgcccctaccccaacccggggcgc
tacgaggcgggcgggcggctcaggcagggcatgcgggtcgccttctcgggtgacacctcg
gtggagcgcgatctgctggaggaccgcgcgaccgaggccgggctgcacgtggccaccagc
ctgtcccggctgaccagcctgctcgtcacgaacgacccggactcgggcacgtccaaggtg
gtcaaggcgcggcagttcggcacgccggtcgtggacgaggcggcgttcgggcaactcctc
gcggatgtggagccggcgtcggaggggtga

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