Streptomyces violaceus: RI060_38025
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Entry
RI060_38025 CDS
T09385
Name
(GenBank) polysaccharide lyase family 1 protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
sjn
Streptomyces violaceus
Pathway
sjn00040
Pentose and glucuronate interconversions
sjn01100
Metabolic pathways
sjn02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
sjn00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
RI060_38025
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RI060_38025
Enzymes [BR:
sjn01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
RI060_38025
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
ivWA
Motif
Other DBs
NCBI-ProteinID:
WND22798
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All DBs
Position
complement(8320013..8320990)
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AA seq
325 aa
AA seq
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MRTPPRTRVHRSTLAVAAASALATVAVLAVPQPAGAAETSPIGFGAGTTGGGSASAVTVS
TLSAFKSAVTGSSAKVVKVNGLISLSGQVDIGSNTTVLGVGSASGFTGGGLRLKKVSNVV
VRNLNISKPVAPADGITVEASTKVWIDHNSFSADRDHDKDHYDGLLDVNHGADNVTVSWN
TFKNHFKGSLVGHSDNNASQDTGRLKVTYHHNHFANVYSRIPSLRFGTGHFYNNYVEGAD
TACHSRMGAQMLVENNVFRSTKVAVTTNRSSDVDGYANLRGNDLGGAATEISRVGSFTSP
PYGYSAEPASSVVTSVTSGAGAGKL
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atgcgtactcccccacgcacacgcgtacacagatccaccctggccgtcgccgccgcgtcc
gcgttggcgaccgtggcggtcctggccgttccccagccggccggggccgccgagacctcg
ccgatcgggttcggcgcggggacgaccggcggcggcagcgcctccgcggtcaccgtctcc
acgctgagcgccttcaaatcggccgtgaccggcagctcggccaaagtggtgaaggtcaac
ggcctgatctcgctgagcggtcaggtcgacatcgggtccaacacgactgtcctgggcgtg
ggttccgcgtccgggttcaccggcggcggactgcgactgaagaaggtctcgaacgtcgtc
gtccgcaacctgaacatcagcaagccggtcgcgcccgccgacggcatcaccgtcgaggcg
tccaccaaggtctggatcgaccacaactccttctcggccgaccgcgatcacgacaaggac
cactacgacgggctgctggacgtcaaccacggcgcggacaacgtcacggtgtcctggaac
accttcaagaaccacttcaagggctcgctcgtcggacacagcgacaacaacgcgagccag
gacaccggccgtctgaaggtgacgtaccaccacaaccacttcgcgaacgtgtactcgcgc
atccccagcctgcgcttcggcaccgggcacttctacaacaactacgtcgagggtgccgac
accgcctgccactcgcgcatgggcgcccagatgctggtcgagaacaacgtcttccgctcg
acgaaggtcgcggtcaccacgaaccgcagcagcgacgtcgacggatacgccaacctgcgc
ggcaacgatctcggtggagccgcgaccgagatctcgcgggtcggcagcttcaccagtccg
ccgtacggctactcggcggagccggcctcgtccgtcgtcacctcggtgacgtcgggtgcg
ggcgccggaaagctctga
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