Sphingobium indicum UT26S: SJA_C1-01980
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Entry
SJA_C1-01980 CDS
T01201
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
sjp
Sphingobium indicum UT26S
Pathway
sjp02020
Two-component system
sjp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sjp00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SJA_C1-01980 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SJA_C1-01980 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sjp03021
]
SJA_C1-01980 (rpoN)
Transcription machinery [BR:
sjp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SJA_C1-01980 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
BAI95032
UniProt:
D4YXF0
LinkDB
All DBs
Position
1:complement(205253..206767)
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AA seq
504 aa
AA seq
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MTLAPRLDLRQSQSLVMTPQLQQAIKLLALSNLEIEAFVAGELEKNPLLEAGGTDDFAPP
ADGVDRAAEQHDLRAETGDADQLIGQGLGAADSPLDVDYGAETFIDDGPGDRMAGAIGSG
GGMDMLSGGSGEAPDFDSFANPEQGLQEHLMDQARSALSGMDLMIAAQLIGQIDEAGYLE
ANLLETAHGMGVPLYRIEQVLGVIHGFDPTGVGARSLSECLALQAKEADRYDPCMAKLLA
NLDLLARGALPQLRRICGVDEEDMADMIRELRGYDPKPGLRFSSESAAPVTPDLFVRPTR
EGWAIEVNSATLPRVLINRTYYVELASGPQDRTSKAWLADCLASANWLVKALDQRQKTIV
KVASEIVRQQEDFFRKGVEHLKPLTLKAVADAIQMHESTVSRVTSNKYLSCPRGLYELKY
FFTSGVAAAGGEGAVSAEAVKSHIKALIAAETADAILSDDTLVDLLRAKGMDIARRTVAK
YREAMGIGSSVQRRRQKALRGQAA
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgacgctcgcgccccgtctcgacctgcggcagagccagtcgctggtgatgacgccgcag
ttgcagcaggcgatcaagctgctggcgctgtccaatctggagatcgaggcgttcgtcgcg
ggcgaactggaaaagaatccgctgctggaggcgggcgggacggatgatttcgcgccgccc
gccgacggggtggaccgggcggcggagcagcatgacctgcgcgccgaaacgggcgatgcg
gaccagttgatcggccagggactgggcgctgccgattccccgctggacgtcgattatggc
gcggagaccttcatcgacgatgggccgggcgaccggatggcgggcgccatcggctccggc
ggcgggatggacatgctgtcgggcggcagcggcgaggcgccggacttcgacagcttcgcc
aatccggaacaggggcttcaggaacatctgatggatcaggcgcgcagcgcgctgtcgggc
atggacctgatgatcgccgcgcaactgatcgggcagatcgacgaggccggttatctggag
gccaatctgctggagaccgcccatggcatgggcgtgccgctttacaggatcgagcaggtg
ttgggcgtgatccacggtttcgacccgaccggggtgggggcgcggtcgctgtcggaatgc
ctagccttgcaggcgaaggaggcggatcgttacgacccctgcatggcgaagctgctggcc
aatctggacctgctcgccaggggggcgctgccgcagttgcgccggatctgcggcgtggac
gaggaggatatggcggacatgatccgcgaattgcgcggttacgatcccaagcccggcctg
cgcttttcctccgagagcgccgcgccggtgacgcccgacctgttcgtgcggccgacgcgg
gagggttgggcgatcgaggtcaacagcgccaccctgccccgcgtgctgatcaaccggacc
tattatgtcgaactcgcctccgggccgcaggacaggacgtccaaggcgtggctggccgat
tgcctggcgagcgccaactggctggtgaaggcgctggaccagcggcagaagaccatcgtc
aaggtcgcgagcgagatcgtccgccagcaggaggatttcttccgcaagggggtggagcat
ctgaagccgctgacgctgaaggccgtggccgacgcgatccagatgcatgaatcgaccgta
agccgggtgacgtcgaacaaatatctgtcctgcccgcgtgggctgtatgaactcaaatat
ttcttcaccagcggcgtggcggcggcgggcggcgagggcgcggtgtcggccgaggcggtc
aagagccacatcaaggcgctgatcgcggcggagacggccgacgccatattgtcggacgac
acgctggtcgacctgctgcgcgccaagggcatggacatcgcccgccgcaccgtcgccaaa
tatcgcgaggcgatggggatcggatcgtcggtgcagcggcggcggcagaaggccttgcgg
gggcaggcggcttag
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