Sphingobium indicum UT26S: SJA_C1-04060
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Entry
SJA_C1-04060 CDS
T01201
Name
(GenBank) putative ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sjp
Sphingobium indicum UT26S
Pathway
sjp03420
Nucleotide excision repair
sjp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sjp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SJA_C1-04060
03430 Mismatch repair
SJA_C1-04060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sjp03400
]
SJA_C1-04060
Enzymes [BR:
sjp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SJA_C1-04060
DNA repair and recombination proteins [BR:
sjp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SJA_C1-04060
MMR (mismatch excision repair)
Other MMR factors
SJA_C1-04060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
DEAD
Motif
Other DBs
NCBI-ProteinID:
BAI95240
UniProt:
D4YY08
LinkDB
All DBs
Position
1:complement(417136..418953)
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AA seq
605 aa
AA seq
DB search
MPLRSVSAAYLAQAADLAGNPGQQAAYDSTGNCVVLAGPGSGKTKTLVLKLARIMAEDVR
APRGAACITYSQECARELTRRLERLGLREASNLFIGTVHGFCLRHLLMPYGRLADLPVPF
PLTVATTRQSDQAMKRVGDRLFGVGHPNKTMDLGRHRRSVLDRTSIFWTSEAELAAWAEG
YEAELRRTGLIDFDDLVVFGQRLVSEHDWVLPLLQAKFPVLAVDEYQDLGVALHRIVKRV
AFDGGVRLFAVGDPDQSIYGFTGADGALLQDLAERDDVERVQLRLNYRSAARIVSASEMA
LGEARGYRSNDPDRQAVIEFTQCADGLEGQAAHAIEEIIPAALAGKPGRALGDIAILYRD
YRAGDVVAEAVAAAGLDFVRVDTAAPYRKVALTSWIEDCAAWCAGGWREARPQLRGLLDR
WLGFHRARIPEAEARDEAQRLTQLLWSLRVEEGIARDFVAALRAGMLDALMAGEPSLADQ
GEQVNRMTAALAVGGALADLDLASLGGRDGSPLHLNLLTLHSAKGCEYDVVIMVGLDLGS
LPWRNELPAARRESRRLFYVGLTRARDEIHMLYSGYVDTARGRMRWGRSPFLDELEARME
EAEDE
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgccgttgcgtagcgtcagtgctgcctatctcgcccaagcggccgatcttgctggcaac
ccgggccagcaggcggcctatgactcgaccggcaactgtgtcgtgctggccggtcctggc
agcggcaagaccaagacgctggtgctcaagctggcaaggatcatggccgaggacgtgcgc
gcgccgcgtggtgcggcgtgcattacctatagtcaggaatgcgctcgcgagctgacccgc
cggctcgagcgattaggcctgcgtgaggcctccaatctcttcatcggcaccgttcacggt
ttctgcttgcggcatctcctcatgccgtatggccggcttgccgatttgccggtgcctttc
ccgcttaccgtcgccacgactcggcagagcgaccaggcaatgaagcgcgtgggcgacagg
ctgttcggtgtcggtcatccgaacaagacaatggaccttggaaggcacaggcgatcggtt
ctcgaccgaacctcgattttttggaccagcgaggcagagctcgccgcgtgggcggaagga
tacgaggccgagctgcggaggacgggtcttatcgacttcgatgaccttgtcgttttcggg
cagcggctcgtctcggagcacgattgggtgctcccgctgctgcaggcgaagttccccgtc
ctcgccgttgacgaatatcaggacctcggtgtggccttgcatcgcatcgtgaagcgcgtg
gcctttgacggcggcgttcggctgtttgcagtgggcgatcccgaccagtcgatctacggc
ttcaccggcgccgatggagcgctcctgcaggaccttgcggagcgggacgacgtcgagcgg
gtgcagctccggctcaactatcgttcggcggcccggatcgtcagcgcctccgagatggcg
ctaggcgaagcgcgcggctatcggtccaacgacccggaccggcaggccgtcatcgagttc
acgcagtgcgctgacggtctcgaagggcaggccgcccatgcaatcgaagagatcatcccc
gcggcgcttgcgggaaagccagggcgagcgctcggcgatatcgccatcctctatcgcgac
taccgggctggcgacgtggtggcggaagcggtggccgccgcgggcctcgacttcgttcgt
gtcgacaccgccgctccttaccggaaggtcgcgctcacgagttggatcgaagattgcgcc
gcatggtgcgcgggcggctggcgcgaggcccggccgcagttgcgcgggctgctagatcgt
tggttgggatttcatcgcgcgcgcatccccgaagccgaggcgcgcgatgaagcgcaacgt
ctaacccagcttctctggtcgcttcgcgtcgaggaggggatcgctcgggattttgtggcg
gcgctacgagccgggatgcttgacgcacttatggctggcgagcccagcctcgccgaccag
ggcgagcaggtgaatcggatgacggcagctctggctgttggaggcgcgcttgccgacctc
gatttggcaagtctcggtgggcgggacggctctccattgcacctgaatctcctgacgctt
cactccgcgaaggggtgcgaatatgacgtcgtgattatggtcggtctcgaccttggcagt
ctgccgtggcgcaatgaattgcccgctgctcgccgcgagagccgccggctcttctacgtc
ggtctcacgcgcgctcgcgacgagatccatatgctttattcaggctacgtcgatacggcc
cgcgggaggatgcgttgggggcgctctccattcctcgacgagctcgaagcgcgcatggag
gaggcggaggacgagtaa
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