Sphingobium indicum UT26S: SJA_C1-05620
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Entry
SJA_C1-05620 CDS
T01201
Name
(GenBank) outer membrane autotransporter barrel
Organism
sjp
Sphingobium indicum UT26S
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Autotransporter
Motif
Other DBs
NCBI-ProteinID:
BAI95396
UniProt:
D4YYG4
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All DBs
Position
1:569032..573474
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AA seq
1480 aa
AA seq
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MQQSPVTNNNLVGGSINGSAFGSVTLANGVAGQVDSLNGQGLGAGTVQITNDGAVDDDVF
GSASTGTVGIVNNGDIAGDVDAVTTEGAISIANASTGRISGDVFAGSDQGAITIANNGQV
LGQTNAVSQDTVFTSTGPTTTVSGTTTTTQSSFSQQTVGGDIDGTYAGINGSLNFGTGND
GSVSQFTGGNSTATVSGAVYGDLSSTAQGFSTTGENVSVVTDSRDAAGTGSVISSSTNTQ
QTVATGGTSTVNISGTVAPGDSSRNGNVTSFGNAGSSVALNGGKVSGNVSSTSQGLTSGF
EFSSETTDNYDAGVFQGSSSTSGFEFTQSQAGGDASVTLQGTSLVGGNVDVNGVTSATAT
IGSAATVEQDVFVNSFVSGDQSFASSSSSTTDAAGDGTAVSSTLSSSTAAANAGNATLAN
AGRVDGDATVGASFGNAAATITGTVGGSVSAFAGTTIGSTENISEFTLDGGIGTQTTATF
RENSEDVGGTASVVVDTAAALQGKGVPSVAGDVNASGIGGASIAIGAGSVVGNADLSSGG
NLFASSLGESISEETVTTFAANGFTPASQVSTTSFGSVGGAASVTNDGTAIGDVEVEGLT
SASLVNNGVLGSGGNLFSVSALDSEASITITDTNPTDAGSRTIVATVNASPVGGNASFTN
SGVALGNVELAGLTGAVTNNGVLAGTTTLGEAQFSGSATVNATINTTDVSVDPVLASQTY
TIDQNGVSRGFVVTGATISQDEVTSALASQLSPLVPLDASLVDPATFNLTVNGQAAVKTA
DINATVNLNNGSITLGDIDAQRDDSGAYLTNTTVNLNGSGFLGASEFKPTAPAVTNYSPV
AQLPEEAEGLFSPTGVRVLGVNELNKTGTGTFVVTGAEYVPAEGATPAAWTLDVNNFNVK
AGEVQLDVVGSDDAVFGIKGNINNDATLVLGRRAPTFVQTVGNSIVTPGPEAIKGIEIHQ
QGNYNQSASGTTVVGVNPSLVRFGNLSVGNAGSSPEVLGPITGGVNVPYFTTPTNAGVFS
TPSSVSVDGNLNLAGKVAVTVSKDSLYSTGDGYTLFTYTGTGDVTATAASSLASPFVTFG
LKHDATAKTVSIEATRKSYATGATNANAASAAVGLDSALADVIARVKTDAAGGNGFATVT
EIANAQDIANIAAGLDWRLNSAQAAQVFNELSSAEIYGSLAAVDQNAVFNTTVNRLAARR
SYGEALGTQLWFNPSANFAKTGGTKSGASKIKTNSYGGAFGIDVAYQDDGAFGIGFGYGQ
HDVTAQGSPEEAQVRTYTIGAYATQGFGPFYGSFQFAYGFSKFEVERDLTLLARTIKGDF
KGKQLDASIELGYDFAAGGSLVVTPYGKLALRRWSMNGFTEEGGAGIGLRVDDASKTVFS
PVLGVKAGALLGDADGIAYRPYAKVQYSFQGNIGSDRTVQYLGGGDAFRLKGVDPDGNGL
IELGVDASVNKRVNLFLSGGYGFGGHNSIGQVRGGISFGF
NT seq
4443 nt
NT seq
+upstream
nt +downstream
nt
ttgcaacagagccccgtcaccaacaacaatctggttggtggcagcatcaacggctccgcg
ttcggcagcgtcacgctcgccaacggcgtcgcgggccaggtcgacagcctgaacggccag
ggtctcggcgcgggcacggtgcagatcaccaatgatggtgcagtcgacgatgatgtgttc
ggctcggcctcgaccggcaccgtcggtatcgtcaacaacggcgacattgcgggcgatgtt
gatgccgtcacgacagaaggcgcgatctccatcgcgaacgcgagcaccggtcgcatcagc
ggcgatgtctttgccggttcggatcagggcgcgatcaccatcgccaacaacggtcaggtg
ctcggtcaaaccaacgcggtgagccaggacacggtgttcacttcgacgggcccgaccacc
acggtttccggcacgaccacgacgacacagtcgagcttctctcagcagacggtcggcggc
gatatcgacgggacctatgccggcatcaacggctcactgaacttcggcacgggtaatgac
ggcagcgtcagccagttcaccggggggaacagcacggccacggtgagcggagcggtctat
ggcgatctctcttcgaccgcccagggcttctcgaccactggcgaaaacgtctcggttgtc
accgactcgcgcgatgccgcaggcaccggttccgtcatcagcagcagcaccaacacgcag
cagacggtcgccaccggcggcacgagcacggtgaacatcagcggcacggtggctcctggc
gattccagccggaacggtaatgtcacttccttcggcaatgctggcagcagcgtcgctctg
aacggtggcaaggtgtcggggaacgtctcctcgaccagccagggcctgaccagcggtttt
gagttcagctcggaaacgaccgacaattatgatgccggcgtgttccagggctccagctcg
accagcggtttcgagttcacgcagagccaggctggcggcgacgcctcggtcacgctccag
ggaacgagcctggtcggcgggaatgtcgacgtcaacggtgtgacttccgccacggcgacg
attggttcggcggcgaccgtcgaacaggatgttttcgtcaacagcttcgtgtcgggcgac
cagtcattcgcctcttccagctccagcaccacagacgctgcgggtgatggcacggctgtc
agctccactctctccagctcgacagccgctgccaatgcaggcaacgcgacgcttgccaat
gccggacgagtggacggcgatgccacggttggtgcgagcttcggcaatgccgccgccacc
atcacgggcaccgtaggcggttcggtaagcgctttcgccggcaccaccatcggtagcacc
gaaaatatttctgagttcacgcttgatggtggcatcggcactcagaccactgcaaccttc
cgcgagaattcggaagatgtgggcggtacggctagcgttgttgtcgacacggcggccgcg
ctgcaaggcaagggcgtgccgagcgtcgcaggcgatgtgaacgcttcgggcatcggcggc
gcctcgatcgccattggtgcaggcagcgttgttggcaatgccgatctcagcagcggtggc
aatctgttcgccagcagccttggcgaaagcatctcggaagagaccgtcaccactttcgcg
gctaacggcttcacgcccgccagccaggtatccacgaccagcttcggttccgtgggtggc
gcggcttcggtcaccaacgatggtactgccattggcgacgtggaagttgagggcttgacc
tctgcttcgctcgtcaacaacggcgtgctgggctcgggcggaaacctgttcagtgtttcg
gctctggactccgaagcgagcatcacgatcaccgacacgaatccgacggatgccggttcg
cgcacgatcgttgctacggtcaatgcttcgccggtcggtggcaatgccagcttcaccaac
agcggtgtggccctgggtaatgtcgaactcgccggcctcactggcgcggttaccaacaat
ggcgttctcgctggtacgaccacccttggtgaagcgcagttcagtggctcggcaacggtc
aacgcgacgatcaacaccaccgacgtcagcgtcgatccggtgctggcctcccagacctat
acgatcgaccagaatggcgtgtcgcgcggcttcgtcgtgacaggtgccaccatctcgcag
gatgaggtcacctcggccctggcctcgcagctgtctccgttggtgccgctcgatgcctcg
ctggttgacccggcgacgttcaacctgacggtgaacgggcaggcagcggtcaagacggct
gacatcaatgcgacggtcaacctcaacaacggctcgatcacgcttggcgacattgacgcc
cagcgcgatgacagcggcgcttacctgaccaacaccaccgtcaacctgaacggcagcggc
ttcctaggcgcgagcgagttcaagccgacggctccggcagttacgaactacagccccgtg
gcgcaattgcctgaagaagctgaaggtctgttctccccgactggcgtccgcgtgctgggc
gtcaacgagttgaacaaaaccggcaccggcactttcgtcgtcactggcgccgaatatgtc
ccggcggaaggcgcgaccccggctgcctggacgctcgacgtcaacaacttcaacgtgaag
gcgggtgaagttcagctggatgtcgtgggctcggacgacgccgtgttcggcatcaagggc
aacatcaataatgatgccacccttgtccttgggcgtcgtgcaccgaccttcgttcagacc
gtcggtaacagcatcgtcactccgggtccggaagcgatcaagggcatcgaaatccaccag
cagggcaactacaaccagagcgccagcggcacgacggtagtgggtgtcaacccctcgctg
gttcgtttcggcaacctgtcggtcggcaatgccggttcctcgcctgaggtgttgggcccg
atcaccggtggtgtgaacgtcccttacttcaccactccgaccaatgccggcgtcttctcg
accccgtcttcggtctcggtggatggcaacctgaacctggccggcaaggtcgcggtgacg
gtgtcgaaggacagcctctattcgacgggtgacggctatacgctcttcacctacaccggc
accggggatgtcacggcgacggccgcttcatcgctcgcttcgcccttcgtcaccttcggc
ctgaagcatgacgcgacggccaagacggtatcgatcgaggcgacccgcaagagctacgcc
accggcgcgaccaatgccaatgcggcttcggccgcagtgggccttgacagcgctctggcc
gatgtcatcgcccgggtgaagaccgacgccgctggcggcaacggctttgcgacggtgacg
gagatcgccaatgctcaggacatcgccaacatcgctgctgggcttgattggcgcctgaac
agcgcacaggcggcgcaggttttcaacgagctttcctcggctgagatctacggttcgctt
gccgctgtcgatcagaacgcggtcttcaacaccaccgtcaaccgcctggccgctcgtcgc
agctatggtgaggcgctgggcacccagctctggttcaacccctcggcgaacttcgccaag
acgggcggcaccaagtcgggcgcgtcgaagatcaagaccaacagctatggtggtgcgttc
ggtatcgacgtcgcctatcaggacgatggtgccttcggcatcggctttggctatggccag
catgatgtgaccgctcaggggtcgccggaagaagcgcaggttcgcacctacacgatcggt
gcctatgcgacccagggcttcggccccttctacggcagcttccagttcgcatacggcttc
tcgaagttcgaagtcgaacgtgacctgaccctgctggctcgcacgatcaagggcgacttc
aagggcaagcaactggatgcgagcatcgagctgggctatgacttcgctgccggcggcagc
ctggttgtgacgccctacggtaagctggcgctgcgtcgctggtcgatgaacggcttcacc
gaagaaggcggcgcgggcatcggcctgcgtgtcgacgacgcatcgaagacggtcttctcg
ccggtgctgggtgtcaaggcgggagccctgctgggtgatgccgatggcatcgcctaccgt
ccctacgccaaggtgcagtacagcttccagggcaacatcggcagcgaccgcacggtccag
tatctgggcggcggcgatgcgttccgcctgaagggtgttgatccggacggtaacggcctg
atcgaactgggcgtcgatgcctcggtcaacaagcgcgtcaacctgttcctctccggcggt
tatggcttcggtggccacaactcgatcggccaggttcggggtggcattagcttcggcttc
tga
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