Sphingobium indicum UT26S: SJA_C1-07430
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Entry
SJA_C1-07430 CDS
T01201
Name
(GenBank) putative DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sjp
Sphingobium indicum UT26S
Brite
KEGG Orthology (KO) [BR:
sjp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sjp03032
]
SJA_C1-07430
03400 DNA repair and recombination proteins [BR:
sjp03400
]
SJA_C1-07430
Enzymes [BR:
sjp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SJA_C1-07430
DNA replication proteins [BR:
sjp03032
]
Prokaryotic type
DNA Topoisomerases
SJA_C1-07430
DNA repair and recombination proteins [BR:
sjp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SJA_C1-07430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
BAI95577
UniProt:
D4YYZ5
LinkDB
All DBs
Position
1:complement(762263..763270)
Genome browser
AA seq
335 aa
AA seq
DB search
MPPDSVVHANDSLPGITRRAMKRGWAYFDASGTRITDREEIDRLNAIAMPPAYRDCWFCP
HPQGHIQATGYDDRGRKQYRYHIDFRAAREAEKYAGCPAFGRALPRLRARIEADLSKRGL
RKEKTLAAVVRLLDLAKVRVGNEQYAAANKSFGATTLRRRHVDLRGQALRLRYRAKSGRE
HELTITDRRLVRFVRAVQDLPGQHLFQYLDEEGIARPITSSDVNAYISEAMGGDFTAKHF
RTWGASVIAFETLAAGSVSLKQMIEPVAAALGNTPAISRKSYIHPALIALCRNGQDIWRQ
GLRLPRATRYLSRYERGLIAFLEEAGGTTALPLAA
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgccgcccgattccgtcgtccatgccaatgacagcctgcccggcatcacgcgcagggcg
atgaaaaggggatgggcctatttcgacgccagcggcacgcgcatcaccgatcgggaggag
atcgaccggctgaacgccatcgccatgccgcccgcctatcgcgactgctggttctgtccc
caccctcagggccatattcaggcgaccggctatgacgaccggggccgcaagcaatatcgc
tatcacatcgatttccgcgccgcgcgggaggcggagaaatatgccggctgccccgccttc
ggccgcgccctgcccaggctgcgcgcccggatcgaggccgacctgtcgaagcgcggcctg
cgcaaggaaaagacgctggccgcggtcgtccgcctgctcgacctggccaaggtgcgcgtc
ggcaacgagcaatatgccgccgcgaacaagagcttcggcgcgaccacgctgcgccgccgc
catgtcgacctgcgcggacaggcgctgcggctgcggtatcgggccaagtccgggcgggag
catgaactgacgatcaccgaccgccgcctcgtccgcttcgtccgcgcggtgcaggacctg
ccggggcagcatctgttccaatatctggatgaggaaggcatcgcccggccgatcacctcc
agcgacgtcaacgcctatatatcggaggcgatgggcggcgatttcaccgccaagcatttc
cgcacctggggcgcctccgtcatcgccttcgaaacgctggcggcgggcagcgtctcgctc
aagcagatgatcgagccggtcgccgcggcgctgggcaacaccccggcgatcagccgcaaa
agctatatccaccccgcgctgatcgcgctttgccgcaacggacaggacatatggcgacag
gggcttcgcctgccgcgcgcaacccgctatctgtcccgttacgaacgcggactgatcgcc
tttctggaggaggccggcggcacgaccgcccttcccctggcggcctga
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