Sphingobium indicum UT26S: SJA_C1-07660
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Entry
SJA_C1-07660 CDS
T01201
Name
(GenBank) putative ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sjp
Sphingobium indicum UT26S
Pathway
sjp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sjp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SJA_C1-07660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjp03019
]
SJA_C1-07660
03009 Ribosome biogenesis [BR:
sjp03009
]
SJA_C1-07660
Enzymes [BR:
sjp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SJA_C1-07660
Messenger RNA biogenesis [BR:
sjp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SJA_C1-07660
Ribosome biogenesis [BR:
sjp03009
]
Prokaryotic type
rRNA processing factors
SJA_C1-07660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
BAI95600
UniProt:
D4YZ18
LinkDB
All DBs
Position
1:complement(780107..782785)
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AA seq
892 aa
AA seq
DB search
MTMRMLIDARHREETRVAVVKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPREDREALLREERAHAEEEAALRADYDDDDHADAGDGGL
EVVEATHHHDDEDHGEEAAENGNGDNGRGRGRRGKGDDAADELRRKRMALRRRYKIQDVI
KRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNAADRKRLKS
IIAEMALPSTMGCIVRTAGLQRTKPEIKRDFDYLARLWDEIREKTLKSDAPALIHNDSDL
IKRAIRDIYNKDIEEVIVEGEYGYKAAKDFMKLLMPSHARRVKQYADAVSLFQRASVEDQ
LAAMYNPVVQLKSGGYLVINPTEALVSIDINSGRSTREHGIEQTAVATNLEAAREIARQL
RLRDMAGLVVIDFIDMEMNSNIRKVEKAMKEALKDDRARIQVGRISGFGLMEMSRQRLRT
GVLEASTRQCPHCEGTGLVRTASSAGLSALRMLEEEAARGRGNLITLRASQEAAFYVLNN
KRRELDEIEQRYGVRIAILPDGEVEGARMSVEASGPRPERVVDYTPMVEDDDDLDVVEEL
DEEEIEEVEAAQEERAERGEDRGDDREGGGRRRRRRRRRRGGQRDEHRAEGEAQGEAGED
ADVAEEDAEGEGEAATVEAAAEGEGEGRRRGRRGRRGGRRRRETGEEAVSEGSVASEEAV
EAVEAEAVAEPVAEAAPEAPAEEEAPKIRRRPRARKAKESAAPAAEAVEAVVEAPVEAAP
EAPVAEEAPAKPKRTRRKKAEPVAEEAAPVEAVPEAPMAEEAPAKPKRTRRKKAEPVAEE
AVAVEAAPEAPVEAVAPAETAEAVTVNGDAEGGGENDDGTPRRGWWQRTFGQ
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgacaatgcgtatgctgatcgatgcgcgccaccgggaagaaacccgggtcgcggtcgtc
aaaggtaaccggatcgaggagttcgacttcgaatcggccgagcacaagcagctcaagggc
aatatctacctggccaaggtcactcgcgtagagccgtcgttgcaggcggctttcgtcgat
tatggcggcaaccgccacggcttcctggccttcagcgaaatccatcccgattattatcag
atcccccgcgaggaccgcgaagcgctgctgcgcgaggaacgcgcccatgcggaggaagag
gccgcgctgcgcgccgactatgacgatgacgatcatgccgatgcgggcgatggcggtctg
gaagtcgtcgaggcgacccatcatcatgatgatgaggatcatggcgaagaggcggccgaa
aacggcaatggtgacaatggcaggggccgcggccgccgcggcaagggcgacgacgccgcc
gacgaactgcgccgcaagcgcatggcgctgcgccgccgctacaagatccaggacgtcatc
aagcgccgccaggtgctgctggtgcaggtcgtcaaggaggagcgcggcaacaagggcgcg
gcgctgaccacttacctgtcgctggcgggccgctattgcgtgctgatgcccaacaccagc
catggcggcgggatttcgcgcaagatttcgaacgccgccgaccgcaagcggctgaagtcg
atcatcgcggagatggccctgccctccaccatgggctgcatcgtccgcaccgcgggcctc
cagcgcaccaagccggagatcaagcgcgacttcgactatctggcgcgcctgtgggacgag
atccgcgaaaagacgctgaaatccgacgcccccgcgctgatccacaatgacagcgacctc
atcaagcgggcgatccgcgatatctacaacaaggatatcgaggaagtcatcgtcgagggc
gaatatggctacaaggcggcaaaggacttcatgaagctgctgatgcccagccatgcgcgc
cgggtgaagcaatatgccgacgccgtgtcgctgttccagcgggcgagcgtcgaagaccag
ctggcggcgatgtacaatcccgtcgtgcagttgaagtcgggcggctacctggtcatcaat
ccgaccgaggcgctggtgtcgatcgacatcaactccggccggtcgacccgcgagcatggg
atcgagcagaccgccgtcgccaccaatctggaggcggcgcgggaaatcgcgcggcagttg
cgcctgcgcgacatggccgggctggtcgtcatcgacttcatcgacatggagatgaactcc
aacatccgcaaggtcgagaaggcgatgaaggaggcgttgaaggacgaccgcgcccgcatc
caggtcggccggatttcgggcttcggcctgatggagatgagccgccagcggctgcgcacc
ggcgtgctggaggcgtcgacccgccagtgcccgcattgcgagggcaccgggctggtccgc
accgcttcgtcggcgggcctttccgcgctgcgcatgctggaagaggaggcggcgcgcggg
cgcggcaacctgatcacgctgcgggcgagccaggaggcggccttctacgtcctcaacaac
aagcgccgcgaactggacgagatcgagcagcgctatggcgtgcgcatcgcgatcctgccc
gatggcgaggtggagggcgcgcgcatgtcggtcgaggccagcgggccgcgtccggagcgg
gtggtcgactatacgccgatggtcgaggacgatgacgatctcgacgtcgtggaggaactg
gacgaggaagagatcgaggaggtcgaagccgcgcaggaggaacgcgccgagcgtggcgag
gatcgcggcgatgatcgggaaggaggcggccgtcgccgccgccgccgccgccgccgtcgg
ggcggccagcgcgacgagcatcgcgccgagggcgaagcgcagggcgaagccggcgaggat
gccgacgtggccgaggaggacgccgagggcgaaggcgaagccgcgactgtggaagccgcc
gccgagggtgaaggcgaaggccgccgccgcggtcgtcgtggccgccggggcggacgccgc
cgccgcgagactggcgaggaagcggtgagcgaaggctcggtcgcgagcgaggaagcggtc
gaggccgtcgaggccgaggcggtcgccgagccggtcgcggaagccgcgcccgaagcaccc
gccgaggaggaagcacccaagatccgccggcgtccccgcgcacgcaaggcgaaggaaagc
gcagcccctgccgccgaggcagtggaagccgtggtcgaggcgcctgtcgaagccgccccg
gaagcgccggtggccgaagaggcgcctgccaaacccaagcgcacccgccgcaagaaggcc
gaaccggtagcggaagaagccgcgcccgtcgaagccgtgccggaagcaccgatggctgag
gaggcccccgccaagcccaagcgcacccgtcgcaagaaggctgagccggtagcggaagaa
gccgtcgccgtagaggctgcgccggaagcgccagtcgaagccgtcgcgcctgccgaaacc
gccgaagcggtcacggtgaacggcgatgccgagggcggcggtgaaaatgatgacggcacc
ccgcgccgtggctggtggcaacgcaccttcggccagtaa
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