Sphingobium indicum UT26S: SJA_C1-14190
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Entry
SJA_C1-14190 CDS
T01201
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sjp
Sphingobium indicum UT26S
Pathway
sjp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sjp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SJA_C1-14190 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sjp03400
]
SJA_C1-14190 (mfd)
Enzymes [BR:
sjp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SJA_C1-14190 (mfd)
DNA repair and recombination proteins [BR:
sjp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SJA_C1-14190 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
Cas3-like_C_2
SecA_DEAD
RecG_dom3_C
UB2H
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BAI96253
UniProt:
D4Z0X1
LinkDB
All DBs
Position
1:complement(1413676..1417140)
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AA seq
1154 aa
AA seq
DB search
MTDLLKILKASAPMTLSGVPAGFQPWLLADIARAAPSRTLFVAPDEQLMRAVADTAHYFA
PEIEIVEIPAWDCLPYDRASPSLRTAAARLAGLYALQGRPQGPQLVLTTLNALTQRTLTP
FRVRQLVAKLAPKERIAISRLADMLQANGYVRTDTVHDRGEFAIRGGIVDLFPGGEEQPL
RLDFFGDEIETVRRFDPADQRTSGSVEGFTLLPASEALLDEETIKRFRGRYREIFGATAT
GDPLYQAVSDGRRLQGMEHWLPLFEERLVPLTDHLGDDSLILLDHGVAGAAEARFEAIRD
YHANRAAAKSSDPGAYRPLEPRALYLEAEEWAALARDWPMHATTPFHEPESASVLDFAVD
GPRDFAPERAQNANVYEAVGKHIAALQRTKKKVVIASYSGGARERLSGLLADHGLKRIAA
ADSWQEALGIAAGGSTVLTVLPLDHGFTAPDVAVLTEQDMLGDRLVRRAKRKKSADAFLA
ELATLSPGDLVVHMDHGIGRYEGLTQIPVAKAAHDCVALEYAGGDKLYVPVENLEVLSRY
GSESEGVSLDKLGGEAWQRRKARMKERIREIAGELLKTAAERALRPATVAEPDSAGYPAF
VDRFPYQETDDQDRAISDVIEDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMAGMQVV
VICPTTLLARQHHMNFEERFRGFPVKIGRLSRLVPDKEAKAVKAGLADGTVDIVVGTHAL
LAKGLEFKRLGLVIVDEEQRFGVTHKERLKSLKTDVHVLTLTATPIPRTLQMAMSGLREL
SVIQTPPVDRLAVRTYIMPWDGVVIREALLREHYRGGQSFFVVPRISDLTEIEEFLRTEV
PEVRPVVAHGQMSATEVEERMSAFYDRRYDVLLSTTIVESGLDIPSANTLIIHRADRFGL
AQLYQLRGRVGRAKTRAYAYFTTPANRVITETAEKRLKVLSDLDTLGAGFQLASHDLDIR
GAGNLVGDEQSGHIKEVGFELYQSMLEDAILEAKAGGAGLEKARESFSPQITVDAPILIP
EDYVPDLDLRMGLYRRLNEVEDRQGLEAFAAELIDRFGKLPPPTQNLFKIIEIKQNCVAA
NIAKIDVGPKGALVSFFEDRFPRPEGLVAYIQRLNGVARLRPDSKVVVNRAWADPAARLN
GALQLSKGLAKAAA
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaccttctcaagattctcaaagcctccgccccgatgaccctttccggcgtgccg
gccggtttccagccctggctgctggcggatatcgcgcgggcagccccgtcccgcaccctg
ttcgtcgcccctgacgaacagctcatgcgcgccgtggcggataccgcgcattatttcgcg
ccggagatcgagatcgtcgaaatccccgcctgggactgcctgccctatgaccgggccagc
ccttcgctgcgcaccgccgcggcgcggctggcgggcctctacgccctgcaagggaggccg
caggggccgcaactcgtcctcaccacgctcaacgccctcacccagcgcacgctgacgccg
ttccgcgtgcggcaactggtggcgaagctcgcgcccaaggaacggatcgccatctcgcgg
ctggccgacatgctgcaggccaatggctatgtgcgcaccgacaccgtgcatgatcggggc
gagttcgccatacgcggcggcattgtcgacctgttcccaggcggcgaggaacagccgctc
aggctcgatttcttcggagacgagatagagacggtgcgccgcttcgatcccgccgaccag
cggaccagcggcagcgtcgagggcttcaccctgctcccggcgtcggaggctttgctggac
gaggagacgatcaagcgtttccgcggccgctatcgcgaaattttcggcgccacggccacc
ggcgacccgctctatcaggcggtgagcgacgggcgccgcctgcagggcatggaacattgg
ctgccgctgttcgaggaacggctggtgcccctgaccgaccatctgggcgacgacagcctg
atcctgctggaccatggcgtggcgggcgcggcggaggcgcggttcgaggcgatcagggac
tatcatgcgaaccgcgcggcggcgaaatcctccgatccgggcgcctatcggccgctggag
ccacgggccctctatctggaggcggaggaatgggccgccctggcgcgcgactggccgatg
cacgccaccacccccttccatgagccggaaagcgcctccgtcctcgacttcgccgtggat
ggcccacgcgacttcgcgccggagcgggcgcagaacgccaatgtctatgaggcggtgggc
aagcatatcgccgcgctccagcggacaaagaagaaggtcgtcatcgccagctattcgggc
ggggcgcgggaacggctttccggcctgctggccgatcatgggctgaagcggatcgcggcg
gcggacagctggcaggaggcgctgggcatcgcggccgggggcagcacggtgctgaccgtc
ctgccgctggatcatggcttcaccgcgcccgacgtggcggtgctgaccgaacaggacatg
ctgggcgaccggctggtgaggcgggccaagcggaagaaaagcgcggacgctttcctggcc
gaactggcgacgctctcgcccggcgatctggtcgtgcacatggaccatggcatcggccgc
tatgaggggctgacccagattcccgtcgccaaggcggcccatgattgcgtcgcgctggaa
tatgcgggcggcgacaagctctatgtgccggtcgaaaatctggaggttctctcccgctac
ggctccgaaagcgaaggcgtcagcctggacaagctgggcggggaggcctggcagcggcgc
aaggcgcggatgaaggaacgcatccgcgagattgcgggcgaactgctcaagaccgcggcg
gagcgcgccctgcggcccgcgaccgtggcggaacccgacagcgcgggctatcccgccttc
gtcgaccgcttcccctatcaggaaaccgacgatcaggaccgggcgatcagcgacgtgata
gaggatctgggcgctggcaggccgatggaccggctggtctgcggcgatgtcggcttcggc
aagacggaggtggccttgcgcgccgccttcgtcgcggcgatggcggggatgcaggtagtg
gtgatctgcccgaccaccctgctcgcccggcagcatcacatgaatttcgaggagcgtttc
cggggtttcccggtgaagatcggccgcctgtcccgcctggtgccggacaaggaggcgaag
gcggtgaaggccggccttgccgacggaaccgtcgacatcgtggtgggcacccacgcgctg
ctggccaagggactggaattcaagcggctgggccttgtcatcgtggacgaggaacagcgg
ttcggcgtgacgcacaaggaacggctgaagtcgctcaagaccgacgtccatgtgctgacg
ctgacggcgacgcccattccgcgcaccttgcagatggcgatgtcgggcctgcgggaactg
tcggtcatccagacgccgccggtggatcgcctggcggtgcggacctacatcatgccgtgg
gacggagtggtgatccgcgaggcgctgctgcgcgaacattatcgcggcggccagagcttc
ttcgtcgtgccgcgcatttccgacctgacggagatcgaggaatttctccgcaccgaagtg
cccgaagtgcggccggtggtcgcccatggccagatgagcgcgacggaggtggaggaacgc
atgtccgccttttacgacaggcgctacgatgtgctgctctcgaccaccatcgtcgaaagc
gggctcgacatcccctccgccaacacgctcatcatccaccgggcggaccgcttcggcctg
gcgcagctctatcagcttcgcgggcgggtcgggcgggcgaagacgcgcgcctatgcctat
ttcaccacgcccgccaaccgggtgatcaccgaaacggcggaaaagcggctgaaggttctg
tccgacctggacacgctgggcgcggggtttcagcttgcgtcccacgacctcgacatacgc
ggcgcgggcaatctggtgggcgacgagcagtccggccatatcaaggaggtcgggttcgaa
ctctaccagtcgatgctggaggacgcgatcctggaggcgaaggccggcggcgcggggctg
gagaaggcgcgggagagcttctcgccgcagatcaccgtcgacgcaccgatcctcattccg
gaggattatgtgcccgacctcgacctgcgcatgggcctttaccgccgcctcaacgaagtc
gaggaccggcaggggctggaggccttcgccgccgaactgatcgaccgcttcggcaagctg
cctccgccgacgcaaaacctgttcaagatcatcgagatcaagcagaattgcgtcgccgcc
aatatcgcgaaaatcgatgtcggaccgaagggcgcgctggtcagcttcttcgaggaccgc
ttcccccggccggaggggttggtcgcctatatccagcggctgaacggcgtggcgcggttg
cggcccgacagcaaggtcgtggtgaaccgcgcctgggccgatccggcggcgcggctcaat
ggcgcgctgcagctttccaaggggctggcgaaagccgcggcctag
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