Sphingobium indicum UT26S: SJA_C1-17390
Help
Entry
SJA_C1-17390 CDS
T01201
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sjp
Sphingobium indicum UT26S
Pathway
sjp03030
DNA replication
sjp03430
Mismatch repair
sjp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sjp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SJA_C1-17390 (dnaE)
03430 Mismatch repair
SJA_C1-17390 (dnaE)
03440 Homologous recombination
SJA_C1-17390 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sjp03032
]
SJA_C1-17390 (dnaE)
03400 DNA repair and recombination proteins [BR:
sjp03400
]
SJA_C1-17390 (dnaE)
Enzymes [BR:
sjp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SJA_C1-17390 (dnaE)
DNA replication proteins [BR:
sjp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SJA_C1-17390 (dnaE)
DNA repair and recombination proteins [BR:
sjp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SJA_C1-17390 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
Scaffold
COE1_HLH
HHH_3
Motif
Other DBs
NCBI-ProteinID:
BAI96573
UniProt:
D4Z1U1
LinkDB
All DBs
Position
1:complement(1747208..1750744)
Genome browser
AA seq
1178 aa
AA seq
DB search
MPHAGFVPLRVFSSFTMLEGAIDPKKIAKQAKALGFPAAAITDRNGLYGSMAFSDACKGE
GVQPIIGAMVGVSRPDRPANAAPVHDWIALYAQDAAGYDNLCALVSMAHLDRPVEEVPHI
SLDMLEGRTDGLIALTAGGEGALARLFAEDQPAAALAYAKRLEALFPGRLYIEICRRFDP
IEGKAEPELLDLAYARDLPLVATNPTCFAEPHFHEAHDVMLCIADSAYVETPDRRTSSPD
AWMKPAAEMKRLFDDLPEALANTLVVAQRCAVAAPKRKPILPSLAGDIEGEAKMLREQAT
AGLEARLAKAGIADEEARKPYFERLKFETDIIIQMGFPGYFLIVADFIKWAKDKDIPVGP
GRGSGAGSVVAWALTITDLDPLQLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQQ
KYGADHVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPWTLERSLNGV
AEFRAEYDNDAQVKRLIDYAMKLEGFPRHSSTHAAGVVIGDRPLSQLVPLYRDPRSDMPV
TQFDMKYVEGAGLVKFDFLGLKTLSVLQKAVQLLAGRGVEIDLNSLGWDDPAVYELLQRG
DTVGVFQLESEGMRKTLAAVRPTNFGDIIALVSLYRPGPMDNIPMFGRRKNGQEEIEYPH
ILLKPILEETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKIKAEMDAQRARFVEG
CAKSDIAAAKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHYPAEFYAASMAFD
IHLTDKLTVFVDDMRRMGLTCLAPDINRSLADFSVEAVDCEGDDPRLGFAVRYALGGLKG
VGEKAMEQLVAEREAGGSFKSLDDFADRIEPRLLNRRQLESLAAAGAFDGVHPDRAGVHA
AAETILSVASSAAEARESGQGGLFGDVETPHADVRVPPHQTWSTADRMAQEKEAFGFYFS
AHPVDRYRHLAEARGAKSYGAICAEPVAEGGRANGVMAAMVEDVRWRETRRGARYAAATF
SDSSGQFQASCFDEDACRAIEDMAREGDCALLMVELDRLPGEETPRVTIRGIEPFRQLAN
NSRMELVVDVSDAAAIGVLAQILASARGGRSEVFLRAPVGGGKAARLFLGDDYLIGADQV
DSIATIAGLRIGSFERMEAKADGYRARNRRSGLRLVAG
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgcctcatgccggtttcgtcccccttcgcgtcttttcatccttcaccatgctggaaggg
gcgatagaccccaagaagatcgcgaagcaggccaaggccctgggctttcccgccgcggcc
atcaccgaccgcaacggcctgtacggctccatggccttttccgacgcctgcaagggggag
ggggtgcagccgatcatcggcgcgatggtcggcgtttcgcggccggaccggccggccaat
gcggcgcccgtgcatgactggatcgccctctatgcgcaggatgccgccggctacgacaat
ctctgcgcgctggtgtcgatggcgcatctcgaccgcccggtcgaagaagtgccgcatatc
agcctcgacatgctggaggggcggaccgacggcctgatcgccctgaccgccgggggagag
ggcgctctggcacggctctttgccgaggatcagccggcagcggcgcttgcctatgccaag
cggctggaagcgttgttccccggccggctctatatcgaaatctgccgccgcttcgacccg
atcgaagggaaggcggaaccggaacttctcgacctggcctatgcccgcgacctgccgctg
gtggcgaccaacccgacctgttttgccgagccgcattttcacgaggcgcatgacgtgatg
ctctgcatcgccgacagcgcctatgtcgagacgcccgaccggcggaccagttcgcccgac
gcctggatgaagccggcggcggaaatgaagcggctgttcgacgatctgcccgaagcgctc
gccaacacgctggtggtcgcgcagcgctgcgccgtcgccgcccccaagcgcaagcccatc
ctgcccagcctggccggcgacatagagggcgaggcgaagatgctgcgcgagcaggcgacg
gcagggctggaggcgcggctggccaaggccggcatcgccgacgaggaagcgcgcaagccc
tatttcgagcggctgaaatttgaaaccgacatcatcatccagatgggctttccgggctat
ttcctgatcgtcgccgatttcatcaaatgggcgaaggataaggatattccggtggggccg
ggccgcggttcgggcgcgggatcggtcgtcgcctgggcgctgaccatcaccgatctcgat
ccgctgcaactggggctgctgttcgaacgcttcctgaacccggaacgcgtctccatgccg
gatttcgacatcgacttctgcgaaacgcggcggggggaggtgatccgctacgtccagcag
aaatatggcgcggaccatgtggcgcagatcatcaccttcggaaagctgaaggcgcgggcc
gtgctgaaggacacgggccgggtgctgcagatgagctatggccaggtcgaccgcctggcc
aagctggtgcccaaccatccgaccgatccatggacgctggaacgctcgctgaacggcgtc
gcggagttcagggcggaatatgacaatgacgcgcaggtcaagcggctgatcgactatgcg
atgaagctggagggctttccgcgccacagttccacccatgcggcgggcgtagtgatcggg
gacaggccgctgtcgcaactggtgccgctctatcgcgatccccgttcggacatgccggtg
actcagttcgacatgaaatatgtcgagggcgcgggactggtgaagttcgacttccttggc
ctcaagacattgtcggtgttgcagaaggcggtgcaactgctggccggacggggcgtggag
atcgacctcaattcgctcggctgggacgatccggcggtctacgaactgctccagcgcggc
gacacggtcggcgtgttccagttggaatcggagggcatgcgcaagacgctggccgccgtg
cgtccaaccaatttcggggacatcatcgcgctggtgtcgctctaccggccgggtccgatg
gacaatatcccgatgttcggccgtcgcaagaacgggcaggaagagattgaatatcctcac
atattgctgaaaccgatcctggaagaaacctacggcatcttcgtctatcaggaacaggtg
atgcaggcggcccagatattggcgggctattcgctgggcgacgccgacctcctgcggcgc
gccatgggcaagaagatcaaggcggagatggacgcgcagcgcgcccgcttcgtcgaaggg
tgcgcgaaaagcgacatcgcggcggccaaggcgaacgaactgttcgacttgatcgacaag
ttcgcgggctatggcttcaacaagtcgcacgccgccgcctatgcgctgctcgcctatcag
accgcctggctgaaggcgcattatccggcggaattctacgccgcgtccatggctttcgac
atccacctgaccgacaagctgacggtgttcgtggacgatatgcggcgcatggggctgacc
tgcctggcgccggacatcaaccgcagcctcgcggacttctcggtcgaagcggtcgattgc
gaaggcgacgatccgcgcctgggctttgccgtgcgctatgcgctgggcgggctgaaaggc
gtgggcgagaaggcgatggaacagcttgtggccgagcgggaggctggcgggtcgttcaag
tcgctggacgatttcgccgaccggatcgaaccgcgcctgctcaaccggcggcagttggaa
agcctggcggcggcgggcgcctttgacggcgtgcatcccgaccgggccggagtccatgcg
gccgcggaaacgatcctcagcgtagcttccagcgccgcggaggcgcgggaaagcggacag
ggcggcctgttcggcgatgtcgaaacgccgcatgccgatgtgcgcgtcccgccgcaccag
acctggtcgacggcggaccgcatggcgcaggaaaaggaggctttcggcttctatttctcc
gcccatccggtggatcgctaccggcatctggcggaggcgcggggcgcaaagagctatggc
gcgatatgcgcggaacccgtggcggaaggcggccgggccaatggcgtgatggccgccatg
gtcgaggatgtgcgctggcgcgaaaccaggcggggggcgcgctatgccgccgccacattc
tccgacagcagcggtcagtttcaggcgagctgcttcgatgaggatgcctgcagggctatc
gaggatatggcgcgggagggtgattgcgcgctgctgatggtggaactggaccggctgccg
ggcgaggaaacgccgcgggtgacgattcgggggatcgagcctttccgccaactcgccaac
aattcccgcatggaactggtggtcgatgtgagcgatgcagccgcaatcggagtgctggcg
cagattctggcgagcgccaggggagggcggagcgaagtcttcctgcgggcgccggtgggc
ggcggcaaagccgcgcgcttgttcctgggcgacgattatctgatcggcgcggatcaggtc
gacagcatcgcgacgatagcgggcctgcgcatcgggtcgttcgagcggatggaagccaaa
gcggacggctatcgcgcccgcaaccggcgttccggcttgcggctggtggcgggctaa
DBGET
integrated database retrieval system
