Sphingobium indicum UT26S: SJA_C1-20480
Help
Entry
SJA_C1-20480 CDS
T01201
Name
(GenBank) putative helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sjp
Sphingobium indicum UT26S
Pathway
sjp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sjp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SJA_C1-20480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjp03019
]
SJA_C1-20480
Enzymes [BR:
sjp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SJA_C1-20480
Messenger RNA biogenesis [BR:
sjp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SJA_C1-20480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
ChuX_HutX
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BAI96882
UniProt:
D4Z2Q0
LinkDB
All DBs
Position
1:complement(2045529..2046914)
Genome browser
AA seq
461 aa
AA seq
DB search
MQFTDLGLAEPILKALAAKKYASPTPIQAQAIPVLLKGKDLCGIAQTGTGKTAAFALPSL
DHFARNPKPTPLQGCRMLVLSPTRELAAQIAQSFRDYGRFLKLSVEVVFGGVPINRQIRA
LGRGVDIVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPKER
QNLFFSATMPGEIEALASQFLHDPVKVSVAPQSTTAERVRQQATFVNQMEKQALLNLTIR
SEDIDRALIFTRTKHGADRVVRFLEGAGIQAVAIHGNKSQAQRTTALQAFRHGHVKLLVA
TDIAARGIDVSGVSHVINFELPNVPEQYVHRIGRTARAGAEGVAISFVADDERPYLKAIE
RTTKVKLDVVPLPENFVEAVRNLPKAAPQRKGREQTPEQKTRRAEGQRRYQDQQKQPRGN
AERAHRPDGEAANPARKNFRRRRGGSAVGAHKGAVQKTGGR
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttaccgaccttggccttgccgagccgatcctgaaggcgctggccgccaagaaa
tatgcctcgccgacgccgatccaggcgcaggccatccccgtgctgctgaagggcaaggac
ctgtgcggcatcgcgcagaccggcaccggcaagaccgctgccttcgcgctgcccagcctt
gaccatttcgcccgcaatcccaagccgacgccgctccagggctgccgcatgctggtgctg
tcgccgacgcgcgaactcgccgcgcagatcgcgcagagcttccgcgactatggccgcttc
ctgaagctgtccgtggaggtcgtgttcggcggcgtgccgatcaaccggcagatccgggcg
ctggggcgcggcgtcgacatcgtcgtggcgacgccgggccgtctgctcgacctgatcgac
cagcgcgccttcaccatcaaggacaccgagatattcgtcctcgacgaagccgaccagatg
atggacatgggcttcatccacccgttgaagcgcatcgccaagctgctgccgaaggagcgg
cagaacctcttcttctccgccaccatgccgggcgagatcgaggcgctggccagccagttc
ctgcacgatccggtcaaggtgagcgtcgcgccgcagtcgaccacggcggagcgggtccgg
cagcaggctaccttcgtcaaccagatggagaagcaggctctgctgaacctgacgatccgg
agcgaggatatcgaccgcgcgctgatcttcacccggaccaagcatggcgccgaccgggtc
gtgcgattcctggaaggggcggggattcaggccgtcgcgatccacggcaacaagagccag
gcgcagcggaccacggcgctccaggctttccgccacggccatgtgaagctgctggtggcg
accgacatcgcggcgcgggggatcgacgtttcgggcgtgtcccacgtcatcaatttcgaa
ctgcccaatgtgccggaacaatatgtccaccgcatcggccgcacggcgagggccggggcg
gagggcgtcgcgatcagcttcgtggcggacgacgagcggccttatctgaaggccatcgag
cggacgaccaaggtgaagctcgacgtcgtgccgctgccggagaatttcgtggaggcggtg
cgcaaccttcccaaggccgcgccgcagcgcaagggccgggaacagacgccggaacagaag
acgcgacgcgccgagggccagcgccgctatcaggaccagcagaagcagccgcgcggcaat
gccgaacgggcgcatcggccggacggcgaggcggcgaaccctgccaggaagaattttcgc
cgccgccgcggcggcagcgctgtcggcgcgcacaagggcgcggtccagaagaccggcgga
cggtga
DBGET
integrated database retrieval system
