Sphingobium indicum UT26S: SJA_C1-22330
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Entry
SJA_C1-22330 CDS
T01201
Name
(GenBank) hemolysin-type calcium-binding repeat protein VCBS
Organism
sjp
Sphingobium indicum UT26S
Pathway
sjp02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
sjp00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
SJA_C1-22330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Big_9
DUF5801
Cadherin_4
Cadherin_5
Motif
Other DBs
NCBI-ProteinID:
BAI97067
UniProt:
D4Z385
LinkDB
All DBs
Position
1:complement(2243372..2252110)
Genome browser
AA seq
2912 aa
AA seq
DB search
MDFERDWDSKGTVDHQQALHPEAAALAAKGKAVHPGKMHHADVVRTVAPNPDGTVVLPAG
TDINQIEVSGRNLIVHLPDGTDMVILDGAVVMPRLVVGDVEIPSVNLAALLIGEEPQPAA
GPPRSSGGNFIGPDGNVGDPHGLGDLLPPTELLFTQPETREILPVPLQDDEEPAVTIITP
NQPAGATAATAGVSEASLPARGSEPAGSAAASDSERTTGTIAITATDGLAGVTINGVAIA
TVGQTVTTPLGVLTITSITPSAIGYSYVLSDNVVGAPPAEVFTVVVTDSDGDQASATLTI
SIADDAPTAVNDADSVTEDGPLVADGNVLTGSGGSDANATDGVADIQGADGAVVSTTGSF
QGSYGTLTLAASGAYSYTLANGNAAVQFLVPGQTLTDSFSYTITDADGDTSTATLTITIN
GADDGVTITGLNGAPGIEGAEVVLLENDLSDGSSPDAAGLTKTGSFGVNGPDGLSSVTVG
GVSVLANGAFVAGQVVTTPVGTLTITGFTATATQGGVPTAGTFTYSFVLTDNSLGHGAAG
ADSILQSFAVVVTDRNGSAANASVDVRIVDDVPTANNDVDGVAAGAYGPETGNVITGAGT
VSGAAGADVRGADGAVVSTTGTFEGAYGTLTLNADGSYVYVRAAGTPGGVSDSFSYTLRD
GDGDTSTATLRIDIANSNVMIVSIPKVGEGTIVDESGLVNPMGSNAGSGVDTTDGTITYT
APDGPATVTINGQPVIIGTTIATDKGILTITGLNEGQIDYTYELTTNTTGDDVTDSFVVT
VTDVDGDTATDTLTITILDDVPTATNDTDSVREDGPLVADGNVITGSGGSDANGTDGNAD
VQGADGAQVSAIAFGGTAGTVGAPLAGLYGSLVIQANGSYAYTLDNENGVVQGLDKTETL
TETFTYTLTDGDGDARTATITITIQGSDDGVTINGLDGEGAEETVFENDLPGGSSENVAA
LTQTGGFTLSAPDGVATVTVGGQPIFGAGGFIGGVTIANAYGTLSITGFTPTLGADGDVI
GGTVSYSYVLTDNTLLHSGVNDGSLTDSFAVVVTDTDGSTDSASLDIRVVDDVPTAVNDV
AGQLTENAAVTIDVFANDVAGADGVNLASGVALESGAAKGTVVYQGNGVFLYTPNAGAEG
SDSFTYTITDGDGDKSTATVTINLLQDSTPTVSVTDMTVSEAGLPGGTQQAGNSETATGS
MTIATGGDTLTKVEVQDKNGAWVDVTGATASTPVVVAGAAGALTVTSDGAGHYSYSYTLA
VNDPAHPDNVTSDGDGISGAADPKAGDAFAVRVTDSDGDVSPADTINVTVLDDAPIATAD
SGSVSEGGSLIVAAADGVLDNDQPGADGYAPGVVGVAKGSDPSSPVSGQVGTAVAGDYGT
LTLFADGSYRYDATPNAISADQQDVFVYTIRDADGDLATTTLTIDVANVALAPDNQTKTV
FEAALDTGITGSDIAAGSVTGSAPGQPTETATGQLNVAGAVSYTLTSSATGSHGQLQLNA
NGSYTYTLTSPVDGPTANDGPLTFAGAEVFTYQAVDGSGNIANGTITIDVVDDVPTAVND
ALLTVAEDGADIGGNVLTNDTPGADGATLTSVTIGGVTTAINAVGTTNVSGAFGAYTFTA
AGAWTFNPSTNLNNASGVSAGFSYVITDGDGDQSTAVQPITVTDGANPIAGAPISLALDD
QNLAGGTTQGNPDFVQDNVSFTAGSDALTGFAFATDLSALGGGLTWNRVSATLIEGWDGP
VGTGVKIVALTLTAPASIGAGLSGNVQVTATLLDNYDSHPNIALDDSVSLGSVGVVASDQ
DGDSATATVNLSVSDDVPQAVNDGQLAIVDDNASGVVVGTVAGLLGNDVFGADGPGSPAI
AIGTGNLGGTISIVGGNLVYTSHHNIAAPYASIGETFTYTIKDGDGDTSSATFSVLLTDT
GPSISAAAAAFTVDEDGLANGVTQPVTGDVDGADIVKTGTLAGLNFGNDGAGNIVLGAVA
DTGLRTLSNHVIQTIWDGTSHTLTGKDAVTGDNIFTLQITDVASGAYRFELLAPVKHSDP
ASEDDKSFTVAVTVTDAENESASGTISVTIDDDSPAVTATLPAAGSLVVDESNLAFDATA
SFAGNFTALYGADGKGSLSYSLGVSAQGAATNLFDTATGNRVYLFVESGKVVGREGTSSG
NAAGGPVVFQLTVDALGAVTLDQQRAVLHTPDTGPNQAIGLDVGSLITLTATAVDGDADT
VSQQINFGQTISFLDDVGTLGAFSNITVVNGANVVGNGTFSYNAGADGHGSFAITGPVLP
GISYTTTQNATGALLTATTDPDGPGGNPPVTVFTLQVNANGTSVFTLVTPQAATSETISL
LGLSAGGPTPFVQTADGRVEFTGNGNGVNSSTQGFGVDNQFVGNGENFTIEFHNPGQAGD
QAATVNPDMVSSIILKNDNINGSLGIKVTVYNDVTGQSEVVYTNFNVTGTSTLIDPVMSE
FNRVSIEGVGGSGQGVRFTSLVINKTILPSDIDLHFTVQATDKDGDVTSTSTLNVFVDAT
SPTPPVAIDLNGDGLHFVGLDAGVTHDYGNGAVATAWVSSEDGLLGHVTGKGIDIVFTDD
APGAQTDLEGLRLAYDSNGDGKLDTADTAFAEFGVWQDANGNGAVDQGEFKSLTDLGIAS
IDLNSDGKTYSAANGDVTVLGEASFTRTDGTKGTVGDVIFATGSSDASKTTESTASGFNQ
ALVAASLVAVAGAAEAPAEQQPAPTATESAAPVTETAPAVTVEAEPAATQESAPTTLAAN
DDQATHEQPAPTGHAAEEAAPDHATLSDGDAHVSTVETADAPQPDLSGHQGLLAQSIDLP
PAFDGNAAAVLAAQQAAPAANAADVVKEALGAHDAPNIDALLAALPGGEHASTPILLNPV
AGEAVDSGHLAAATAIFEAAMVAHEAMAVAHG
NT seq
8739 nt
NT seq
+upstream
nt +downstream
nt
atggatttcgagcgcgattgggatagcaaaggcaccgtcgaccatcagcaggcccttcat
ccggaagcggccgccctggcggcgaagggcaaggcggtccatcccggcaagatgcatcat
gcggacgtcgtgcggacggtcgcgcccaatcccgacggcaccgtcgtgctgcccgccgga
accgacatcaaccagatcgaggtttcgggacgcaatctgatcgtccacctgcccgacggc
accgacatggtgatcctggacggcgcggtggtcatgccgcgcctggtcgtgggcgacgtc
gaaattccctccgtcaacctggcggccttgctgatcggggaggagccgcagcccgcagcg
ggtccgccgcgcagctccggcggcaatttcatcggcccggacggcaatgtgggcgacccc
catggcctgggcgacctgctgccgcccaccgaattgctgttcacccagccagaaacgcgg
gagatcctgccggtcccgctgcaggatgatgaagagccggcggtcaccatcatcaccccc
aatcagccggccggcgccactgctgccacggccggggtgagcgaggctagccttcccgcg
cgcggcagcgagcctgccggttcggcggccgccagcgatagcgagcgcactacgggcacc
atcgccatcaccgccaccgacgggctggcgggcgtcaccatcaacggcgttgcgatcgcc
actgtcggccagacggtcacgacgccgctcggcgtcctcaccatcacctcgatcacgccg
tccgccatcggctacagctatgtgctgagcgacaatgtagtgggcgcgccgcccgccgaa
gtcttcaccgtcgtcgtcaccgacagcgatggcgatcaggcgagcgccaccctgaccatc
tccatcgcggatgacgctccgaccgccgtcaacgacgctgacagcgtgaccgaggatggc
ccgctggtcgccgacggcaatgtcctgaccggcagcggcggcagcgacgcgaacgcgacc
gacggcgtcgccgacatccagggcgcggacggcgcggtcgtgtcgaccaccggcagcttc
cagggcagctacggcacgctgacgctggccgcgtcgggcgcctacagctacacgctggcc
aacggcaatgcagcggtgcagttcctggtgcccggacagacgctgaccgacagcttcagc
tacacgatcaccgatgccgatggcgacacctccacggcgacgctgaccatcaccatcaac
ggcgcggatgacggcgtcaccatcaccggcctgaacggcgcgccggggatcgagggcgcc
gaagtcgtgctgctggaaaacgacctgtccgacggcagttcgcccgatgcggctggcctc
accaagaccggctcgttcggcgtcaacggccctgacggcctgtcgagcgtcaccgtcggc
ggcgtgtcggtgctggcgaacggcgccttcgtcgcggggcaggtggtgacgacgccggtc
ggcacgctcaccatcaccggcttcaccgccaccgccacccagggcggcgtgcccacggcc
ggaaccttcacctacagcttcgtgctgaccgacaacagcctgggccatggcgcagcgggc
gcggacagcatcctgcagagcttcgccgtggtggtgaccgaccgcaacggatcggccgcc
aacgcctcggtcgatgtgcgcatcgtggacgacgtgccgaccgccaataatgatgtcgac
ggcgtcgccgccggcgcctatggcccggaaaccggcaatgtcatcaccggggcgggcacc
gtttccggcgcggcgggcgccgacgtcaggggcgcggacggcgcggtcgtttcgaccacc
ggcacgttcgagggcgcttacggcacgctgacgctgaacgccgacggcagctatgtctat
gtccgcgcggccggaacgccgggcggggtgagcgacagcttcagctacacgctgcgcgac
ggcgacggcgacacctccaccgccacgctgcggatcgacatcgcgaacagcaatgtcatg
atcgtctccatcccgaaggtgggcgaaggcacgatcgtcgacgaatccggcctggtcaac
ccgatggggtccaatgcgggcagcggcgtcgacacgacggacggcaccatcacctacacc
gcgccggacggcccggcgaccgtgacgatcaacgggcagccggtcatcatcggaacgacc
atcgccaccgacaagggcatattgacgatcaccggccttaacgaaggccagatcgattat
acctatgaactgacgaccaacacgaccggcgacgacgtgacggacagcttcgtcgtcacc
gtcaccgacgtggacggcgacacggcgaccgatacgctgaccatcaccatcctggacgac
gtgccgaccgcgacgaacgacacggactcggtgcgcgaggacggcccgctggtggccgac
ggcaacgtcatcaccggttcgggcggcagcgacgccaacggcaccgacggcaatgccgac
gtgcagggcgccgacggcgcgcaggtcagcgccatcgccttcggcgggacggccggaacg
gtcggcgcgccgctggccggactgtacggatcgctcgtgatccaggcgaacggcagctac
gcctatacgctggataatgaaaatggcgtggtccagggcctggacaagaccgagaccctg
accgagaccttcacctacacgctgaccgacggcgacggcgatgcgcgcaccgcgaccatc
accatcaccatccagggcagcgacgatggcgtcaccatcaacggcctggacggcgaaggg
gcggaggaaaccgtcttcgaaaacgacctgccggggggtagttcggaaaatgtggcggcg
ctgacccagacgggcggcttcaccctgtccgcgccggacggcgtggcgaccgtcactgtc
ggcggccagccgatcttcggcgcgggcggcttcatcggcggcgtcaccatcgccaacgcc
tatggcacgctcagcatcaccggcttcacgccgacgctgggcgcggacggcgacgtgatc
ggcgggaccgtcagctacagctatgtcctcactgacaacacgctgctgcacagcggcgtc
aatgacggcagcctgacggacagtttcgcggtcgtcgtcaccgacacggacgggtccacc
gacagcgccagcctggacatccgcgtggtcgacgacgtgccgacggcggtgaacgacgtc
gcgggccagctcaccgaaaatgcggcggtgacgatcgacgtcttcgccaatgacgtggcc
ggggcggacggcgtcaacctcgccagcggcgtggcgctggagagcggcgcagccaagggc
acggtcgtctatcagggcaatggcgtcttcctctacacccccaatgcgggcgcggagggc
agcgacagcttcacctacacgatcaccgacggcgacggcgacaagtccaccgccacggtg
acgatcaacctgctccaggattcgacgccgaccgtcagcgtcaccgacatgaccgtgtcc
gaagcgggcctgcccggcggcacgcagcaggccgggaacagcgagaccgcgaccggctcc
atgaccatcgcgaccggcggcgacacgctgaccaaggtcgaggtgcaggacaagaacggc
gcctgggtcgacgtcaccggcgcgacggcgagcacgccggtggtcgtcgcgggcgcggcg
ggcgcgctgaccgtgacctcggacggggcggggcattacagctacagctacaccctggcg
gtcaacgacccggcccatcccgacaatgtcaccagcgacggcgacggcatcagcggcgcg
gccgaccccaaggcgggcgacgccttcgcggtgcgcgtgaccgacagcgacggcgacgtc
tctccggccgatacgatcaacgtgaccgtgctggacgacgcgcccatcgcgacggccgac
agcggttcggtgagcgagggcggctcgctgatcgtcgcggcggccgacggcgtgctcgac
aatgaccagccgggcgcggacggctatgcgccgggcgtggtcggcgtggccaagggcagc
gatccgtccagccccgtcagcggccaggtcggcacggcggtcgcgggcgattacggcacg
ctgacgctcttcgccgacggcagctatcgctatgacgcgacgcccaacgccatttcggcc
gatcagcaggacgtgttcgtctataccatccgcgacgcggacggcgacctggcgacaacg
acgctgaccatcgacgtcgccaatgtcgcgctcgccccggacaatcagaccaagaccgtc
ttcgaagccgcgctggacaccggcatcaccggatcggacatcgcggcgggcagcgtcacc
ggcagcgcgccgggccagcccaccgaaaccgcgaccggccagctcaacgtcgcgggcgcg
gtcagctacacgctgaccagttccgccaccggcagccacggccagcttcagttgaacgcc
aatggcagctacacctacacgctgacctcgccggtggacggcccgacggcgaatgacggt
ccgttgaccttcgcgggcgcggaggtcttcacttatcaggcggtcgacggctccggcaat
atcgccaacggcacgatcaccatcgacgtggtggacgatgttccgacggccgtgaacgat
gctctcctgaccgtggcggaggatggcgccgacatcggcggcaacgtcctgaccaacgac
acgcccggcgcggacggcgcgaccctgacctccgtcaccatcggcggcgtcaccacggcg
atcaacgccgtgggcacgaccaacgtcagcggggccttcggcgcctataccttcacggcg
gcgggcgcgtggaccttcaacccgtcgaccaacctcaacaatgccagcggcgtcagcgcg
ggcttctcctacgtcatcaccgacggcgacggggaccagtcgaccgccgtgcagccgatc
acggtcacggacggggctaaccccatcgcgggcgcgccgatcagcctggcgctggacgat
cagaatctggcgggcggcacgacgcagggcaatcccgacttcgtgcaggataacgtcagc
ttcacggccggatcggacgcgctgaccggcttcgccttcgccacggacctgtccgccctg
ggcggcgggctgacctggaaccgcgtcagcgccacgctgatcgagggctgggacggcccg
gtcggcacgggcgtcaagatcgtcgcgctgacgctgacggcgcccgcctccatcggcgcg
ggcctcagcggcaatgtgcaggtgacggcgacgctgctcgacaattatgacagccatccg
aacatcgccctggacgacagcgtctccctgggcagcgtcggcgtcgtcgcgtccgatcag
gacggcgacagcgccaccgcgacggtcaacctgtccgtttcggacgacgtgccgcaagcg
gtcaatgacggccagttggccatcgtcgatgacaatgccagcggcgtggtcgtcggcacg
gttgccgggctgctcggcaatgacgtcttcggcgcggacggccccggctcgcccgccatc
gcgatcggcaccggcaatctgggcggcaccatctccatagtcggcggcaatctggtctac
acgtcgcaccacaatatcgcggcgccttacgcctccatcggcgagacgttcacctacacc
atcaaggatggcgacggggacacctcctcggcgaccttctcggtcctgctgaccgatacg
ggaccgtcgatcagcgcggcggctgcggccttcacggtcgatgaggacggtcttgccaac
ggcgtgacccagccggtgacgggtgacgtggacggcgcggacatcgtcaagacagggacg
ctggcagggctcaacttcggcaatgacggcgccggcaatatcgtgctgggcgcggtggcc
gacacgggcctgcggaccctgtccaaccatgtgatccagacgatatgggacggcacaagc
cacacgctgactggaaaggatgcggtgacgggggataatatcttcacgttgcagatcacc
gacgtggccagcggcgcctatcgcttcgaactgctcgcgccggtcaagcacagcgatccg
gcgagcgaggacgacaagtccttcaccgtcgcggtaaccgtgacggatgccgaaaatgaa
agcgccagcgggacgatcagcgtcaccatcgacgatgacagcccggcggttacggcgaca
ctgccggctgcgggttcgctggtcgtcgatgaaagcaatctggcgtttgacgccacggcc
agcttcgcaggcaacttcactgcgctctacggggccgacggcaaggggtcgctcagctat
tcgctgggggtcagcgcgcagggcgcggccaccaacctcttcgataccgccaccggcaat
cgcgtctatctgttcgtggaatcgggcaaggtcgtgggccgcgaaggcaccagttcgggc
aatgcggccggggggccggtcgtgttccaactgacggtcgacgcgctgggcgcggtgacg
ctggatcagcagcgcgccgttctccacacgcccgataccggacccaatcaggctatcgga
cttgatgtgggcagcctcatcaccctcacggcgaccgccgtggacggcgacgccgatacg
gtgagccagcagatcaatttcggccagaccatcagcttcctggacgatgtcggcacgctt
ggcgccttcagcaacatcaccgtcgtcaacggcgccaatgtcgtgggcaacggcacgttc
agttataatgcaggcgccgacgggcatggcagcttcgccatcaccggcccggtgctgccc
ggcatcagctacaccaccacgcagaacgctacgggcgcgctgctgacggccacgaccgat
cccgacggcccggggggcaatccgcctgtcaccgtcttcacccttcaggtgaatgcgaac
ggcacgtcggtcttcacgctggtgacgccgcaggcagcgaccagcgagacgatctcgctg
ctgggcctcagcgccggcggtccgacccccttcgtccagacggcggacggccgggtcgaa
ttcaccggcaacggcaatggcgtgaactcgtccacccagggcttcggcgtcgacaatcaa
tttgtcggcaacggagaaaatttcaccatcgaattccacaatccgggacaggcgggcgat
caggccgcaactgtcaatccggatatggtgagctccatcatcctcaagaacgacaacatc
aacggatcgctgggcatcaaggtcaccgtctataatgacgtgaccggtcagtcggaggtg
gtctacaccaatttcaacgtcaccggcacgtccaccctgatcgatcccgtgatgtcggaa
ttcaaccgcgtttcgatcgagggcgtgggcggcagcggccagggcgtccgcttcaccagc
ctggtgatcaacaagacgatcctgccctccgacatcgacctgcatttcactgtgcaggcg
acggacaaggatggcgacgtcacctccacatcgacgctcaacgtcttcgtcgacgcgacc
agcccgacgccgccggtggcgatcgacctgaacggcgacggcctgcatttcgtgggcctg
gatgccggcgtcacccatgattatggcaacggcgcggtggcgacggcgtgggtgtcgtcc
gaagacggactacttggccatgtcacgggcaagggcatcgacatcgtctttaccgacgat
gctccgggtgcgcagaccgacctggaaggcctccgcctcgcctatgacagcaatggcgac
ggcaagctggatacggccgacactgccttcgccgaattcggggtctggcaggacgcgaac
ggcaatggcgcggtcgatcagggcgaattcaagtcgctgaccgatctcggcatcgcatcg
atcgacctgaattccgacggcaagacgtacagtgccgccaatggcgacgtcaccgtgctg
ggcgaagcgagcttcacccgcaccgacggcaccaagggcacggtcggcgacgttatcttc
gccaccggcagcagcgatgcgagcaagaccacggaaagcaccgccagcggcttcaaccag
gcgctggtcgcggccagcctggtcgccgtggcgggcgcggccgaggctccggccgagcag
cagcccgcgccgaccgcgaccgaaagcgccgcgccggtcacggaaaccgccccggccgtc
acggtcgaggccgagcctgccgccacgcaggaaagcgcgcccaccacgctcgccgcgaac
gacgatcaggcgacccatgagcagcctgcgccgaccggccacgctgctgaagaggccgcg
cccgaccatgccaccctgtccgatggcgatgcgcatgtctcgaccgtcgaaacggccgac
gcgcctcagcccgacctcagcggtcatcagggtctgctggcccagtccatcgacctgccg
cctgccttcgacggcaatgcggcggcggtcctggctgcgcagcaggccgctccggcagcc
aatgccgccgatgtcgtgaaggaagcgctgggggcccatgacgcgccgaacatcgacgcg
ctgctggccgccctgccgggtggcgagcatgcctcgacgcccatcctgctgaacccggtc
gcgggcgaggcggtggacagcgggcatctggcggcggccacggccatcttcgaagcggcg
atggtcgcgcatgaagcgatggcggtcgcccatggctga
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