Sphingobium indicum UT26S: SJA_C1-32920
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Entry
SJA_C1-32920 CDS
T01201
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sjp
Sphingobium indicum UT26S
Brite
KEGG Orthology (KO) [BR:
sjp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sjp03016
]
SJA_C1-32920 (rnd)
Enzymes [BR:
sjp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
SJA_C1-32920 (rnd)
Transfer RNA biogenesis [BR:
sjp03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SJA_C1-32920 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
BAI98126
UniProt:
D4Z694
LinkDB
All DBs
Position
1:3278905..3280110
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AA seq
401 aa
AA seq
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MRDGPAHNKIEDHMQIHPLITDSKTLAQFCARIAKSPYIAVDTEFMRENSYWPDLCLVQV
ADEHEAAAIDPKAPGLDLSPLLDLMVDNEDVLKVFHAGGQDLEIIYNLTGKTPHPLFDTQ
IAAMALGLGEQIGYGNLVDAWLGVQLDKGARFTDWARRPLDKRQIDYAIGDVTYLIQIFP
KMLEELRRTGRGDWLDQEMERISDPSNYENKPEEAWQRVRIASRKADVLGRLKALAAWRE
MEAQDKNLPRGRIVKDETLADIASHPPRTQEDLGKVRGLSATWKTNDIGNRLMLALASHA
PLAKEEMPERDPKRPGLGKDGALVADLLKLLLKIRSRDINVAARLIARSDDIDALAAGVR
EDLAILEGWRYEQFGRDAVDLVEGRLAFAVKNGRLKMTRTQ
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcgacgggccagcccataataagatcgaagaccatatgcaaatccatccgctgatt
accgacagcaagactctcgcccaattctgcgcccggatcgccaagtcgccctatatcgcg
gtcgataccgaattcatgcgcgaaaacagctattggcccgacctctgcctggtgcaggtc
gcggacgagcatgaggcggccgccatcgatcccaaggcgcccggcctcgacctgtcgccc
ctgctcgacctgatggtcgacaatgaggacgtgctgaaggtctttcacgcgggcgggcag
gatctggagatcatctacaacctcaccggcaagacgccccatccgctgttcgacacgcag
atcgcggcgatggcgctgggactgggcgagcagatcggctacggcaatctggtcgacgcc
tggctgggcgtgcaactcgacaagggcgcgcgcttcaccgactgggcgcgccggccgctc
gacaagcggcagatcgattatgcgatcggcgacgtcacctacctgatccagatattcccc
aagatgctggaggaactgcgccgcaccggccggggcgactggctggatcaggagatggag
cggatcagcgacccgtccaattacgagaacaagccggaagaggcctggcagcgcgtccgc
atcgccagccgcaaggccgatgtgctgggccgcctgaaggcgctggcggcatggcgcgag
atggaggcgcaggacaagaacctgccccgcggccgcatcgtcaaggacgagacgctggcc
gacatcgccagccacccgccgcgcacgcaggaagacctgggcaaggtgcgcggcctgtcc
gccacctggaagaccaacgacatcggcaaccgcctgatgctggcgctggcaagccacgcg
ccgctcgccaaggaggaaatgccggagcgcgaccccaagcggccgggcctgggcaaggac
ggcgcgctggtggcggacctgttgaagctgctgctgaaaatccgttcccgcgacatcaac
gtcgccgcgcgcctcatcgcccgcagcgacgacatcgacgcgctggcggccggcgtgcgg
gaagacctcgccatcctggaaggctggcgctatgaacagttcggccgcgacgcggtcgac
ctggtggagggtcgcctggccttcgctgtcaagaacggccgcctcaagatgacccgcacg
caatag
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