Sporosarcina jeotgali: PGH26_04215
Help
Entry
PGH26_04215 CDS
T10261
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sjt Sporosarcina jeotgali
Pathway
sjt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sjt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PGH26_04215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjt03019
]
PGH26_04215
Messenger RNA biogenesis [BR:
sjt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PGH26_04215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
RMMBL
DUF4453
CFAP54_N
Motif
Other DBs
NCBI-ProteinID:
WOV85142
UniProt:
A0ABZ0KZ00
LinkDB
All DBs
Position
complement(917368..919035)
Genome browser
AA seq
555 aa
AA seq
DB search
MKSIKNNETAVFALGGLGEIGKNTYAVQFQDEIILIDAGIKFPEDDLLGIDYVIPDYTYL
KRNADKIKGLFITHGHEDHIGGIPYLLKQVNMPVYGGKLALGLLRNKLEEHGLVRSTKLI
EFGEEDVFKFRKTSVSFFRTTHSIPDAYGVVVKTPSGNIVHTGDFKFDFTPVGEPANLAK
MAKIGSEGVLCLLSDSTNAEVPNFTMSERKVGDSLNEIFRKVDGRIIFATFASNIHRLQQ
VIEAAQIHGRKVAVFGRSMDNAITIGRELGYIDAPKDLFVDAQSINRLPANEVMILCTGS
QGEPMAALSRIANGTHRQVQIQPGDTVIFSSSPIPGNTLSVNKTINALFRAGAEVIHGAL
NNIHTSGHGSQEEQKLMLRLIQPKFFMPIHGEYRMLKMHEELAIACDVEPDNIFIMSNGD
VLALTEDTARLAGRVPSGDIYIDGSGIGDIGNVVLRDRKNLSEDGLVIVVATIDKKRNRV
VSGPDLISRGFVYMRESGAMINEAQYMLTRQMHRKLSTGPADIGVLKSDIIDSLSSYLYD
KTKRRPMILPVILEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaatctataaaaaataatgagactgccgttttcgccttaggcggactaggtgaaatc
ggtaagaacacatatgccgttcaatttcaagatgaaatcatcttgattgacgcaggtatt
aaattcccagaagatgatttacttggaattgactacgtcattcctgattacacgtatttg
aaacgcaatgccgataaaatcaaaggactcttcatcacccatggtcacgaagaccatatc
ggaggaatcccttacttattgaaacaagtgaatatgcctgtttacggtggtaaattggcg
cttggattattacgcaacaagcttgaagaacatggtctcgttcgttcaacgaagctcatc
gagtttggtgaagaagatgttttcaagttcagaaaaacatcggtatcattcttccgcaca
acgcacagtattcctgatgcatacggggtcgttgtaaaaactccttcaggcaatatcgta
cacacaggtgatttcaaattcgacttcacccctgtaggagagcctgccaaccttgctaaa
atggcgaagatcggcagcgaaggcgtactatgcctgctctcagatagtacgaatgctgaa
gttccaaactttacaatgtcagaacgtaaagtcggagacagtttgaacgaaatcttcaga
aaagtggacggacgcattattttcgcaacgttcgcttctaatatccatcgattgcagcaa
gtaatcgaggctgcacaaatccacggacgcaaagtcgctgtctttggacggagcatggat
aacgcaattacaatcggccgtgaactgggctacattgacgcgccaaaagatctcttcgta
gatgctcaaagcattaatcgcttgcctgcaaacgaagttatgattttatgtacaggcagt
caaggtgaaccgatggctgcattatccagaattgcaaacgggacacaccgtcaagttcag
attcaaccaggcgatactgtaatcttctcgtcttcaccgattccggggaatacgttaagt
gtaaacaaaacaatcaacgcattgttccgtgcaggtgcagaagtcattcacggcgcactc
aacaatatccatacatctggtcacggttcacaagaagaacaaaaactgatgctccgtcta
attcagccgaaattcttcatgcctatccacggtgaataccggatgttgaagatgcatgaa
gaactagccattgcatgtgacgtagagcccgataatatcttcatcatgtcaaacggtgat
gtccttgccctcactgaagatacggcacgtcttgctggacgagtaccttcaggcgatatc
tatattgacggcagcggaattggggatatcggaaatgtcgttctccgtgatcgtaaaaac
ctttccgaagacggccttgttattgttgtcgcaacaattgataagaaacgcaaccgtgtt
gtatcaggtccggatttgatttcccgcggttttgtttatatgcgtgaatcaggtgcaatg
atcaatgaagcccaatatatgttaacccgtcaaatgcatcgcaaattgtcaacaggacca
gcggatatcggtgtactaaaaagcgacatcatcgattcactcagctcttacctatatgat
aaaacaaaacgcagacctatgattctgcctgtgattttggaagtataa
DBGET
integrated database retrieval system