Sporosarcina jeotgali: PGH26_04855
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Entry
PGH26_04855 CDS
T10261
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sjt Sporosarcina jeotgali
Brite
KEGG Orthology (KO) [BR:
sjt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sjt03032
]
PGH26_04855 (topA)
03400 DNA repair and recombination proteins [BR:
sjt03400
]
PGH26_04855 (topA)
Enzymes [BR:
sjt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PGH26_04855 (topA)
DNA replication proteins [BR:
sjt03032
]
Prokaryotic type
DNA Topoisomerases
PGH26_04855 (topA)
DNA repair and recombination proteins [BR:
sjt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PGH26_04855 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
DUF150_C
Toprim_4
zf_Rg
Motif
Other DBs
NCBI-ProteinID:
WOV85266
LinkDB
All DBs
Position
1040477..1042555
Genome browser
AA seq
692 aa
AA seq
DB search
MADYLVIVESPAKAKTIERYLGKKYKVRASLGHLRDLPRSQMGVDVENNYEPKYITIRGK
GPILQDLKKEAKKAKKIFLAADPDREGEAIAWHLAHQLGVDENSDCRVVFNEITKDAINE
SFKNPRPINTDLVDAQQARRILDRLVGYNISPILWKKVKKGLSAGRVQSVALKLIIDREE
EIKSFEPEEYWSIGAGFSKKEGNFEASFYGTAGKKVKLTDKKQVDGILSTLDGDDFTVSQ
VVKKERKRNPAVPFTTSSLQQEAARKLNFRAKKTMMVAQQLYEGITIGKEGIVGLITYMR
TDSTRTSETAQAEAKTHIESMYGEEFTRKTKAAGKSSAAKTQDAHEAVRPTSVLRTPEAM
KAFLSKDQLKLYKLIWSRFLASQMAPAILDTVTVDLLNNDVQFRATGSQVKFQGFMKVYI
ESHDDKEEEKDNVLPPLAEGETVTCASIDPKQHFTQPPPRFSEARLVKTLEELGIGRPST
YAPTLDTIQKRGYVTLDAKRFVPTELGGIVNSAVNQYFSDITNAEFTAKMEQSLDHIEVG
EIPWVKVIDEFYVDFEKHLKVADEEMEKIEIKDEPAGEDCEKCGSPMVYKMGRYGKFMAC
SNFPDCRNTKAIIKPIGVTCPLCKEGEVVERKSKKNRIFYGCDRYPECEYISWDKPISRP
CPKCESTLVEKRLKKGLQIQCTECDYKEKPQE
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atggcagattacctagtaattgtggaatcaccagcaaaagcaaaaaccattgaacgctat
ttaggaaagaaatacaaagtgcgcgcatcccttggccacttaagagacttgccgcgcagt
caaatgggcgtagacgtagaaaataattatgagccgaagtatattacgattcgcggcaaa
ggcccgattttacaggacttgaaaaaagaagccaaaaaagcaaaaaaaatctttctcgca
gctgaccccgacagagaaggggaagcaatcgcctggcatctggcacatcaacttggtgtg
gatgaaaactcagactgccgcgttgtgtttaacgaaattacaaaagacgcaattaacgag
tcgtttaaaaatccgcgtcctattaatacagacttagtagacgctcaacaagcacgccga
attctagatcggcttgtcggctataatatcagtccgattctatggaagaaagttaagaaa
gggctgtcagcgggacgggttcaatctgttgcgctaaaacttattattgatcgcgaagaa
gaaattaaatcctttgaaccagaagagtattggtcaattggagcgggattcagtaaaaaa
gaagggaattttgaagcttctttctatggaactgcaggtaaaaaagtcaaactgaccgac
aagaaacaagtagatggaatcctttcaaccttggatggcgacgattttaccgtaagccaa
gttgtaaagaaagaacgtaaacgtaatcctgcagtaccgtttactacatcatccttgcag
caagaagcagctcgcaagttaaacttccgcgctaagaaaaccatgatggttgcacagcag
ctgtacgaaggaattacaatcggcaaagaaggaatcgttggtctgattacgtatatgaga
acagactctacgagaacttctgagacggctcaagctgaagctaaaactcatattgagtct
atgtatggcgaggaattcacacgcaaaacaaaggcggcaggcaaatcttcagctgcgaaa
acccaagatgcacacgaagcagtacgtccgacgtctgtacttcgcacacctgaagcgatg
aaagcgtttttatcaaaagatcagttgaaattatacaaacttatctggtcacgtttcctt
gcaagtcaaatggcgcctgcaatcctcgatacagtcactgttgatttactgaacaacgat
gttcagttcagggcaactggatcacaagtgaagtttcaagggtttatgaaagtatatatt
gaaagtcatgatgataaggaagaagagaaggataatgttctgcctcctctagctgaaggg
gaaacggtcacttgcgcttcgattgatccgaaacagcatttcacgcagccgccgccacgt
ttttcagaggcgcggctagtgaaaacgcttgaagaactgggaatagggcggccgtcgaca
tatgcccctacattggatacgattcaaaaaagaggatatgtcaccctggatgcaaagcga
tttgttccgactgaattaggcggaatcgtcaattcagcagtcaatcaatacttctctgac
attactaatgcggaatttacagctaaaatggaacaaagtctggaccatattgaagtggga
gaaatcccatgggttaaggtcatagatgagttttatgtggattttgaaaagcatttgaaa
gtcgcggatgaagaaatggaaaagattgaaattaaggatgagcctgcaggagaagactgc
gaaaagtgcggatctccaatggtttataaaatgggacggtatggtaagttcatggcgtgc
tcgaacttcccggattgccggaatacaaaagcaatcattaaaccaatcggcgtaacgtgt
ccgctttgtaaggaaggcgaagtcgtcgaacggaagagtaagaaaaacagaatcttttat
gggtgtgaccgatatcctgaatgtgaatacatttcgtgggataaaccgatttcgagaccg
tgtccgaagtgtgaaagtacacttgtcgaaaaacgcttgaaaaaaggattgcaaatccaa
tgtacggaatgtgactataaagaaaaaccgcaagaataa
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