Sporosarcina jeotgali: PGH26_05555
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Entry
PGH26_05555 CDS
T10261
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sjt Sporosarcina jeotgali
Pathway
sjt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sjt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PGH26_05555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjt03019
]
PGH26_05555
03400 DNA repair and recombination proteins [BR:
sjt03400
]
PGH26_05555
Enzymes [BR:
sjt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PGH26_05555
Messenger RNA biogenesis [BR:
sjt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PGH26_05555
DNA repair and recombination proteins [BR:
sjt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PGH26_05555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
WOV85402
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All DBs
Position
1179215..1180651
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AA seq
478 aa
AA seq
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MDLHHELKKRFGFDEFRPGQEDVIRSILKRNDTIAILPTGMGKSLCYQLPGQLQDGLVLI
VSPLVSLMEDQVASIRKRGEKRVAAVNSFLSSEQRKYLFDEIHTIKFLFVSPEMISRPDM
TNFLMRLPISILVVDEAHCISQWGFDFRPDYLRLGEFIRLAGNPPVLALTATADAKVEAD
IIHYLHMSNPNVIRQSLDRPNLTYTVQQLEMEADKTTWLKQRLATTKGPGIIYVSSRKRA
EELTHILQQEGILIASYHAGKEAGDRNIIQQQFLTGELSWICATNAFGMGVHKDDIRQVI
HDQMSASAAAYVQEAGRAGRDGKPSSAVLLYVTDDEQKVRFIVQRDLPDEPQVHHFVSMR
ASGESVESSAELAGISETSSRLIQYYLETLSVDDVLKTFTKLKYDKEEKLREMIAYVHAK
TCLRAQLLSYFDEISQEQHDSCCSVCGTAQDSWLLSNESSGNRRRLLQWEERIRLLLC
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atggatcttcatcatgaactaaaaaagcgattcggattcgatgaattccgtccaggtcaa
gaagacgtcattcgctctatattgaaacggaacgacacaattgccatattgccaacaggc
atggggaagtcgttatgctaccagctgcctggtcaactgcaggatggactggtgctcatc
gtttcccctctcgtttccttaatggaagatcaagtggccagtattcgaaaaagaggggaa
aaacgcgttgcagcagtgaattcatttctatcatcggaacaaagaaaatacttattcgat
gaaatccatacgattaaattcttatttgtttcgcctgaaatgatcagccgtccggatatg
acgaattttctaatgagattaccgatttcaattctggtggtggacgaagcacattgtatt
tctcagtggggattcgacttccgtcctgactatttgcgattgggagagttcatccgctta
gcgggaaatcccccggttctcgcattaactgctactgctgatgcaaaagtagaagcagat
attattcactacttacatatgtctaacccgaatgtaatccgtcaatcattagaccggccg
aacttaacgtacacagttcaacaactggaaatggaagccgataaaacaacttggctgaaa
caacgattggcgacaactaagggtcctgggattatttatgtttcttcgagaaagcgtgct
gaagagctgacacatatacttcaacaagaagggatcttaattgcttcttaccacgccgga
aaagaagcgggagaccggaatattattcaacagcagtttttgacaggggagttgtcctgg
atctgtgcaacgaatgctttcggtatgggcgtacacaaagatgatatccgtcaggttatt
catgaccaaatgtctgcttctgcagcggcgtatgttcaggaagcgggccgtgcgggtaga
gatggtaaaccctcaagtgctgtcttgttatatgtaacggatgatgagcagaaagttcgc
ttcattgtacaacgggacctgccagatgagccgcaagtccatcactttgtctccatgagg
gcatctggtgagtcagtggaatcatcggcagagcttgctggtatttctgaaacgagctca
agattgattcaatattacctggaaacactttcggttgatgatgttcttaaaacgttcaca
aagttaaagtacgacaaagaagagaagttaagagaaatgattgcctatgtccacgcaaaa
acctgtttacgtgcacaattactctcttattttgatgaaatttcgcaggaacagcacgat
tcatgctgttccgtatgcggtacagctcaggatagctggcttttaagtaacgagagcagc
gggaatcggagaagacttctgcaatgggaggagagaattcgactattgctttgttag
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