Sporosarcina jeotgali: PGH26_05940
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Entry
PGH26_05940 CDS
T10261
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
sjt Sporosarcina jeotgali
Pathway
sjt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sjt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PGH26_05940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sjt03400
]
PGH26_05940
Enzymes [BR:
sjt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PGH26_05940
DNA repair and recombination proteins [BR:
sjt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PGH26_05940
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
AAA_11
Viral_helicase1
AAA_22
HHH_5
SLFN-g3_helicase
AAA_16
AAA_12
UvrD-helicase
AAA_28
UvrD_C
HHH
AAA
nSTAND3
AAA_5
TsaE
AAA_17
TniB
AAA_18
NAT10_TcmA_helicase
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
WOV85473
UniProt:
A0ABZ0L043
LinkDB
All DBs
Position
1252293..1254803
Genome browser
AA seq
836 aa
AA seq
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MEKTDSAVQEEPFLIGRAVVTIFHNPDSLFTIAKLKVRKTNCSFEGKEIVVKGNFPKLSE
EEEYRFTGRLINHATYGQQFDVKTFQKELPATETGLIHYLSGDMFPGIGRKTAETIINHL
GPEAIRKIMENEDVLDEVPRLNAEKKETLVSVLRDNLGLERTIVKLNEWGFGPQVAMRIY
QTYREVTIEKLTENPYRLIEDVEGVGFQRADELGRQLGITGTHTSRIQAAILHTINTGIL
SSGHVYLEAVQVLPEVKRLLESSQPEEIPFKLISTAIIELVEESRLSAEQRKLYLPSLYF
SELGIASKMERILDQDRENTFPSSEMRKAIGETEERLDVNYAETQIAAIEQALNSPAMIL
TGGPGTGKTTVVRGLVEVYAELHGLTLDPKEYAKKEEPFPIILAAPTGRAAKRLSESTGL
PAMTIHRLLGFTGQEKEEETEREIKARLVIIDEASMLDTWLAHQLLKAIDDDAQILFVGD
QDQLPSVGPGQVLRDFLESGTIPVVELTEIYRQSAGSTIIELAHAIKKSEPLGDLAMKTS
DRSFIRTDADQVTTAVSQIVKNALAKGQAIKDIQVLAPMYKGPAGIDALNSMIQEMVNPA
SSGRKEVTFGDVVYRIGDRVLQLVNQPESNVFNGDMGEVISILKAKETIEKKDLMIVSFD
GIEVTYERSDLNQLTLAYCCSIHKSQGSEFPTVIMPVVRSHRKMLRRNLLYTGITRAKNF
LILCGSPNEFAEGIARMDERERQTTLKERLRGESLEPVASDTPNAETTISDREVSANTAD
ALTDASVQTGPAGETVEVVQSQKELPHVLSIETILDVDPMVGMNGESPYDFMVSVD
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaaccgattcagcagttcaagaagaaccttttttaattggcagagcggtcgta
acgattttccataaccctgatagtttgtttacaattgccaaactgaaagtgcgaaaaaca
aattgttcgtttgaagggaaagaaattgtcgtcaaagggaactttccgaaactatctgaa
gaggaagagtaccggtttaccggaagacttatcaatcacgcaacgtatggtcagcaattt
gatgtaaagacgtttcaaaaagaattaccggcaactgaaacagggttaattcactacttg
tcaggagacatgtttcctggaattggacgaaaaaccgctgaaacgattattaatcatttg
ggcccggaagcgattcgcaagattatggaaaatgaagatgttttggatgaagttccgcgt
cttaacgctgaaaaaaaagagacacttgtttccgttcttcgggataatcttggtttagag
cggaccattgtcaaattgaatgaatggggatttggaccgcaggttgcgatgaggatttat
caaacatatagagaagtaacgattgaaaagctgactgaaaatccatatcggcttattgaa
gatgtggaaggagtaggatttcaacgtgcggatgaacttggcagacagctgggaatcaca
ggtactcatacttctagaattcaagctgcaatcctgcatacaatcaacacagggattctc
tctagcggtcatgtgtacttggaagctgttcaagtgttaccggaagtcaaacgtcttttg
gaatccagtcaacctgaagaaattcccttcaaacttatttcaacagctattattgaatta
gtagaagagagccgtttgagtgcagaacagcgcaaactctatttgccttccttatatttt
tcagaactgggaattgcttcgaagatggaacgtatcttggaccaggatcgagaaaataca
tttccgtcctcagaaatgagaaaagccatcggagaaacggaagaacgtctggacgttaac
tatgcagaaacgcaaattgcggctattgaacaagcgcttaattcgcctgccatgatctta
acggggggaccgggaacagggaaaacgacagtcgtaagaggtctcgttgaagtgtacgca
gagcttcatggcttgacgcttgatccgaaagagtatgccaaaaaggaagagccgtttccg
atcatcttagctgcgcctactgggcgcgctgcaaagagactatcagagtctaccggtctg
ccagcaatgacaatccatcggcttctaggctttaccgggcaagaaaaagaagaagaaacc
gaacgtgaaatcaaagcgagactggttattattgacgaggcatctatgctggatacgtgg
ctcgcgcatcagttattgaaagcaatcgatgatgatgctcaaattttgtttgtcggagac
caagaccagcttccttctgtaggccctgggcaagtgttgcgtgattttttagagtccggc
acaatacctgttgttgaactgactgaaatttatcgccaaagtgctggttcgacaattatt
gaactggcgcatgccatcaaaaagtctgaaccgcttggtgatttagcgatgaaaacatct
gaccgttcatttatccggactgatgcagaccaagtaacgaccgcagtcagccagattgtt
aaaaatgcattagcaaaaggtcaagcgattaaggatattcaagtgttggcaccaatgtac
aaaggtcctgcaggcattgatgcgctgaattcgatgattcaggaaatggtgaatcctgct
tcttccggccgcaaggaagtgacgttcggagatgttgtataccgaatcggagaccgtgtg
ctgcaactcgtcaatcagccagaaagcaatgtctttaatggggatatgggtgaagtgatc
tcaatcctgaaagccaaagagacgattgagaaaaaagatctgatgattgtctcgtttgac
gggattgaagtgacctacgaacgatcggatttaaatcagttaacgctggcctattgctgc
tctattcataagtcacagggaagtgaattccctacagtcattatgccggttgtccgcagt
catcgtaaaatgcttcgccgcaatttactgtacacagggattactcgagccaaaaacttt
ctaattctttgtggcagccctaacgaatttgcagaaggcatcgctcggatggacgagcgt
gaaaggcagacgactcttaaagaacggctgcgcggggaaagcctggagcctgttgcatct
gatacacctaatgctgagacgactatctctgatcgagaagtatccgctaatacagctgat
gctttgactgatgcatccgttcaaacaggtccagcaggtgaaaccgtggaagttgttcaa
tcccaaaaggaactgccgcatgttttatctattgaaacgattttggatgtggacccgatg
gtagggatgaatggtgaaagtccttatgattttatggtgagtgtggattga
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