Sporosarcina jeotgali: PGH26_13915
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Entry
PGH26_13915 CDS
T10261
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sjt Sporosarcina jeotgali
Pathway
sjt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sjt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PGH26_13915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjt03019
]
PGH26_13915
03009 Ribosome biogenesis [BR:
sjt03009
]
PGH26_13915
Enzymes [BR:
sjt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PGH26_13915
Messenger RNA biogenesis [BR:
sjt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PGH26_13915
Ribosome biogenesis [BR:
sjt03009
]
Prokaryotic type
rRNA helicases
PGH26_13915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NAT10_TcmA_helicase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WOV83952
UniProt:
A0ABZ0KX69
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All DBs
Position
complement(2749999..2751543)
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AA seq
514 aa
AA seq
DB search
MTKFSELNISKSTQDSLKRMGFEEATPIQEGTVTFGMEGKDVIGQAQTGTGKTAAFGIPM
IEKIDTSNPAVQALVIAPTRELAIQVSEEIYKIGYGKRARILSVFGGQEISRQIRALKNN
PQIVVGTPGRILDHIKRKTLKLDGVQTLVLDEADEMLNMGFIEDINSILENVPAERQTLL
FSATMPAPIRKIAETFMKNPEMVKIKSKEMTVENIEQFFVKSQEREKFDILSRLLNVQQP
ELAIVFGRTKRRVDELSHALNIRGYIAEGIHGDLTQAKRMSVLRQFKEGKVDILVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGMAITFVTPREMGYLRIVEETTK
KRMNPLQPPTSDEALLGQQKVAVETLAEAVQKNELNDYVQFATDLLGKYDATDLVAAALK
HLTNEPDATPVSITEERPLPSRGGSGGGRGGYKGNRSGGNRSHGGGRGFSGGQRRSSGGS
RDGRSSGGSRDGRSSGGSREGGNRDRSRGGRSER
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
ttgacgaaattttcagaacttaatatcagtaaatctacacaagactctctaaagagaatg
ggctttgaagaggctactccaattcaagaaggtacggttacttttggaatggaaggcaag
gacgtcatcggtcaagcacagacgggaactggtaagacagcagcattcggtatccctatg
atcgaaaaaatcgatacaagcaacccggcagttcaggcacttgtcatcgcgccaactcgt
gagcttgcgattcaggtttctgaagaaatttataaaatcggttacggaaaacgtgcacgc
attctttctgtattcggcggacaagaaatttcacgccaaatccgtgcattgaaaaacaat
ccacaaatcgttgtcggtacaccgggacgtattttggatcacattaagcgtaaaacattg
aagcttgacggcgttcaaacacttgtattggacgaagcagatgaaatgttgaacatgggc
ttcatcgaggacattaactctattcttgagaatgttcctgcagagcgccaaacattgcta
ttctcagctacaatgcctgcaccgattcgtaaaattgcggaaacattcatgaagaatccg
gaaatggttaagatcaagtcaaaagaaatgactgttgaaaacattgaacagttcttcgtg
aaatcacaagaacgtgaaaagttcgatattctatctcgtttgttgaacgttcaacagcct
gaacttgcgatcgttttcggtcgtacaaagcgccgtgttgacgagctttcacatgcactt
aacattcgcggatacattgcagaaggaatccacggtgatttgactcaagcaaaacgtatg
tctgttttgcgtcaattcaaagagggtaaagtcgacattctagttgcaacagacgttgcg
gctcgcggacttgatatttctggagtaactcacgtttacaactttgatattccacaggat
cctgaaagctatgttcaccgtatcggccgtacaggtcgtgctggtaagagcggtatggcg
attacgtttgtaacaccacgtgaaatgggttaccttcgtattgttgaagaaacaacgaaa
aagcgtatgaatccacttcagccgccaacatctgacgaagcacttcttggccagcagaaa
gttgcagttgagacgcttgctgaagctgttcaaaagaatgagctgaatgattacgttcaa
ttcgcaacagatttacttggaaagtacgatgcaacagatctagttgcagctgctttgaaa
cacctaacaaatgagccggacgctactcctgtatccattacagaagaacgtccattgcca
tcacgcggtggcagcggcggtggccgtggcggatacaaaggcaatcgcagtggcggcaat
cgctcacacggcggcggccgcggattcagcggcggtcagcgtcgcagcagcggtggaagc
cgtgacggacgcagcagcggtggaagtcgcgatggacgcagcagcggcggcagtcgtgaa
ggcggaaaccgggatcgctcacgtggcggacggtctgaacgctaa
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