Streptomyces kanamyceticus: CP970_18555
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Entry
CP970_18555 CDS
T06849
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ska
Streptomyces kanamyceticus
Brite
KEGG Orthology (KO) [BR:
ska00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ska03016
]
CP970_18555
Enzymes [BR:
ska01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CP970_18555
Transfer RNA biogenesis [BR:
ska03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CP970_18555
Prokaryotic type
tRNA splicing ligases
CP970_18555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QEU92640
UniProt:
A0A5J6GA24
LinkDB
All DBs
Position
complement(4419023..4420216)
Genome browser
AA seq
397 aa
AA seq
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MSYVEVPGAKVPIRMWTDPTSVEEAAMRQLQNVATLPWIKGLAVMPDVHFGKGATVGSVI
AMRGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSKIEAAIPVGRGMHEEPVGPG
GFHGMATAGWEDFWGRFDGVAEAVKFRQSRAVKQMGTLGSGNHFIEFCLDESGSVWLMLH
SGSRNIGKELADHHIGVAQGLPHNQGLVDRDLAVFVADTPQMAAYRNDLFWAQEYAKNNR
AIMMGLFQDVVRKEFKKAKVTFDPVISCHHNYVSEERYDGMDLLVTRKGAIRAGSGDFGI
IPGSMGTGSYIVKGLGNEASFNSASHGAGRRMSRGAAKRRFSTKDLEDQTRGVECRKDSG
VVDEIPAAYKPIEQVIDQQLDLVEVVAKLKQVICVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtagaggttcccggcgcgaaggtgccgatccgcatgtggaccgacccgacg
tcggtcgaggaagcggcgatgcgccagctccagaacgtcgcgacactgccgtggatcaag
ggtctggccgtcatgccggacgtccacttcggcaagggcgcgacggtcggttcggtcatc
gcgatgcgaggcgcggtgtgtccggcggcagttggggtggacatcggctgcgggatgagc
gccgtcaagacgtcgctgaccgcgaatgaccttccgggtgacctgtcgaggctgcgctcg
aagatcgaggcggcgattccggtggggcgcgggatgcatgaggagcccgtggggccgggg
ggctttcatgggatggctacggcggggtgggaggacttttgggggcggttcgacggcgtc
gccgaagcggtcaaattccgtcagagtcgggccgtgaagcagatgggaacgctcggatcc
ggaaaccacttcatcgagttctgtcttgatgagtcaggttcggtctggctgatgctgcac
tccggctcccgcaacatcggcaaggaactggccgaccaccacatcggtgtggcccagggg
ctcccgcacaaccagggcctggtcgaccgggacctggcggtcttcgtcgcggacaccccg
cagatggcggcgtaccggaacgacctgttctgggcgcaggagtacgcgaagaacaaccgc
gcgatcatgatgggactcttccaggacgtggtccgcaaggagttcaagaaggcgaaggtg
accttcgacccggtgatctcctgccatcacaactacgtcagcgaggagcgctacgacggg
atggacctcctggtcacccggaagggcgcgatccgcgcgggcagcggtgacttcgggatc
atcccgggttcgatgggcaccggttcgtacatcgtgaagggcctcggcaacgaagcgtcc
ttcaactcggcctcgcacggcgcgggtcggcgcatgagccgtggcgccgcgaagcgccgc
ttctcgacgaaggacctggaggaccagacgcggggcgtcgagtgccgcaaggactcgggc
gtcgtggacgagatcccggcggcctacaagccgatcgagcaggtcatcgaccagcagctc
gacctcgtggaggtcgtggcgaagctgaagcaggtcatctgcgtcaaggggtga
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