Streptomyces kanamyceticus: CP970_25155
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Entry
CP970_25155 CDS
T06849
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ska
Streptomyces kanamyceticus
Pathway
ska03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ska00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CP970_25155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ska03021
]
CP970_25155
03019 Messenger RNA biogenesis [BR:
ska03019
]
CP970_25155
Transcription machinery [BR:
ska03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CP970_25155
Messenger RNA biogenesis [BR:
ska03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CP970_25155
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Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
AAA_25
NACHT
ATPase_2
SseB
AAA_22
AAA_19
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
QEU93754
UniProt:
A0A5J6GGZ4
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All DBs
Position
5820659..5821885
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AA seq
408 aa
AA seq
DB search
MPPRRAPHSHVRERTHIMTATATEPVTTTRTATPVSCTGVLDIARDGRGFLRGPGCLPTS
ADIQVSAPLIRQLGLRTGDVLDGEHGARTRTLSGVHRVNGRVPEALRGRRRFGDLTPLHP
RERLHLETAGGPVAGRLVDLVAPVGKGQRGLIVAPPKTGKTVLLQQIAAAVAENHPEAHL
MVVLLDERPEEVTDMRRSVSGEVLASTFDRPAKQHIALAELAVERAKRMVEDGRDVVMLF
DSLTRLCRAYNNAASSGGRTLSGGVDAAAIQGPKKLFGAARLAEEGGSLTMLATVLVETG
SRADDYYFEELKSTGNMELRLDAGIAARRVFPAVDVTPSGTRREELLVPADELAAMWGLR
RALRGRDGQSSLEALLEQVKKTPSNAAFLRQVRQTVPGAVAGPGATAG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgccgccccgccgggcccctcattcgcatgtccgcgaaaggacccacatcatgaccgcc
acagcaacagaaccagtaaccaccacccgtaccgcgactcccgtgtcctgcaccggagtt
ctcgacatcgcccgcgacggccgcgggtttctgcgggggccgggctgcctgcccacctcc
gccgacatccaggtgtccgccccgctcatccgccagctcggtctgcgcaccggcgacgtg
ctcgacggtgagcacggggccaggacccgcaccctcagcggggtccaccgggtcaacggc
cgcgtgcccgaagcgctcagggggcggcggcggttcggtgacctcaccccgctgcacccc
cgcgagcggctccacctggagaccgcgggcgggcccgtcgccgggcggctcgtcgacctc
gtcgcccccgtcggcaaggggcagcgcggcctgatcgtcgcgccgccgaagaccggcaag
accgtcctcctgcagcagatcgccgccgccgtcgccgagaaccaccccgaggcccacctc
atggtggtgctgctcgacgaacgccccgaggaagtcaccgacatgcggcgctcggtcagc
ggcgaggtgctcgcatcgaccttcgaccggcccgccaaacagcacatcgccctcgccgaa
ctcgccgtggagcgcgccaagcgcatggtcgaggacggccgcgacgtcgtcatgctcttc
gactcgctgacgcgcctgtgccgggcgtacaacaacgcggcgtccagcggcgggcgcaca
ctcagtggtggcgtcgacgcggccgccatccagggccccaagaagctcttcggcgcggcc
cggctcgccgaggagggcggctccctgacgatgctcgcgaccgtgctcgtggagaccgga
tcgcgcgccgacgactactacttcgaggagctgaagagcaccggcaacatggagctcagg
ctcgacgcgggcatcgccgcgcggcgcgtcttcccggccgtcgacgtcacgccttcgggc
acccggcgcgaggaactcctcgtaccggccgacgagttggccgccatgtgggggctgcgg
cgcgccctgcgcggcagggacggccagagcagcctcgaggcgctgctcgaacaggtcaag
aagacccccagcaacgccgcgttcctgcggcaggtgcgccagaccgtgccgggcgccgtc
gcgggtcccggcgctacggccgggtga
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