Streptomyces kanamyceticus: CP970_25820
Help
Entry
CP970_25820 CDS
T06849
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ska
Streptomyces kanamyceticus
Pathway
ska03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ska00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CP970_25820 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ska03400
]
CP970_25820 (mfd)
Enzymes [BR:
ska01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CP970_25820 (mfd)
DNA repair and recombination proteins [BR:
ska03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CP970_25820 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
AAA_22
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QEU93866
UniProt:
A0A5J6GLF9
LinkDB
All DBs
Position
5983468..5987022
Genome browser
AA seq
1184 aa
AA seq
DB search
MSLHGLLDAVVKDSALAEAVKAAADGHRAHVDLVGPPAARPFAVAALARESGRPVLAVTA
TGREAEDLAAALRTILPPDGVVEYPSWETLPHERLSPRSDTVGRRLAILRRLAHPSTDDP
ETGPVSVIVAPVRSVLQPQVKGLGDLEPVALRTGQTTDLNEIVEALAAAAYSRVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDEVRERAAALAEQHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLIDVMPKGSMAV
VCDPERVRTRATDLVATSQEFLQASWAATAGGGEAPIDVGAASLWGIADIREHARELGMM
WWSVSPFAAGETLTFGAAAPGDADTLKLGMHAPETYRGDTAKALADTKGWLADGWRVVYV
TEAHGPAARTVEVLGGEGIAARHDADLADLAPSVVHVSCGSIDYGFVDPGLRLAVLTETD
LSGQKAAGKDGQRMPARRRKTIDPLTLESGDYIVHEQHGVGRYIEMVQRTVQGATREYLV
VEYAPAKRGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAA
DLIKLYSARMAAPGHAFGADTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKTVPMDRLI
CGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVKVRALSRF
QSDTESKETLEGLRDGSVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLR
ANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRREL
LREGQVFYIHNRVESIDRAAARLRDIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLV
STTIVESGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETA
HERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADY
RASLEGGVEEEPPLEVKIELPVDAHVPHDYAPGERLRLAAYRAIASANTEEDVKAVREEL
TDRYGKLPEPVENLLLVAGLRMLARACGVGEIVLQGNNIRFAPVDLRESQELRLKRLYPG
TVIKANANQVLVPRPKTAKVGGKPLVGRELLGWVGEFLTSILGS
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtcgtcaaggactccgcgctcgccgaggcggtc
aaggccgccgccgacggccaccgcgcccacgtcgacctggtgggaccgcccgccgcgcgt
cccttcgcggtggccgcgctcgcccgcgagtccggccgtcccgtgctggccgtgacggcc
accgggcgggaggccgaggacctggcggcggcgctgcgcacgatcctgccgccggacggc
gtcgtcgagtacccctcgtgggagacgctcccgcacgagcgcctctcgccccgctccgac
acggtgggccgccgcctcgcgatcctgcgccgcctggcgcacccgagcacggacgacccg
gagaccggaccggtctcggtgatcgtcgcgcccgtacgctcggtgctccagccgcaggtc
aagggcctgggcgacctggagcccgtggcgctgcgcaccggtcagaccacggatctgaac
gagatcgtcgaggcgctcgccgccgccgcgtactcccgggtggaactggtcgagaagcgc
ggcgagttcgcggtccgcggcggcatcctcgacgtcttcccgcccaccgaggagcacccg
ctgcgcgtggagttctggggcgacgacgtcgaggagatccgttacttcaaggtcgccgac
cagcgctcccttgaggtcgcggagcacggcctgtgggcgccgccctgccgcgagctgctg
ctcaccgacgaggtgcgggagcgggcggcggcgctcgccgaacagcaccccgagctgggc
gagctgctcgggaagatcgccgagggcatcgcggtcgagggcatggagtccctcgcgcct
gtcctggtggacgacatggagcttttgatcgacgtcatgccgaagggctccatggcggtg
gtctgcgacccggagcgggtgcgcacccgcgcgaccgacctggtggcgacgtcgcaggag
ttcctgcaggccagctgggcggcgacggcgggcggcggcgaggcgcccatcgacgtgggc
gcggcgtcgctgtggggcatcgcggacatccgcgagcacgcgcgcgagctcggcatgatg
tggtggtcggtctccccgttcgcggcgggcgagacgctgacatttggcgctgccgcgccg
ggggacgcggacaccctcaagctcggcatgcacgcccccgagacgtaccggggtgacacg
gcgaaggcgctcgccgacaccaagggctggctcgcggacggctggcgcgtcgtgtacgtc
accgaggcgcacggacccgccgcgcgcacggtcgaggtgctcggcggcgagggcatcgcc
gcccgccacgacgcggacctcgccgacctggccccgtccgtcgtgcacgtgtcctgcggc
tcgatcgactacggcttcgtggacccggggctcaggctcgcggtcctcaccgagaccgac
ctgtcgggccagaaggcggcgggcaaggacggccagcggatgcccgcgcgccgtcgcaag
acgatcgacccgctgaccctggagtccggcgactacatcgtccacgagcagcacggcgtc
ggccgctacatcgagatggtgcagcgcacggtgcagggcgcgacccgtgagtacctggtc
gtggagtacgcccccgccaagcgcggccagccaggcgaccggctctacatccccaccgac
cagctggagcagatcaccaagtacgtgggcggcgaggctcccaccctccaccgcctgggc
ggcgccgactggacgaagacgaaggcgcgcgcgaagaaggcggtcaaggagatcgcggcc
gacctcatcaagctgtactccgcgcgcatggcggccccgggacacgccttcggcgcggac
acgccctggcagcgcgagctggaggacgccttcccgtacgcggagacgcccgaccagctc
accaccatcgccgaggtcaaggaggacatggagaagacggtcccgatggaccgcctgatc
tgcggcgacgtgggctacggcaagacggagatcgcggtccgcgcggcgttcaaggcggta
caggacggcaagcaggtagcggtcctggtccccaccacactcctggtccagcagcacttc
ggcacgttctccgagcggtactcccaattcccggtgaaggtacgggcgttgagccgcttc
cagagcgacaccgagtcgaaggagaccctggagggcctgcgcgacggctcggtcgacatc
gtgatcggcacgcaccgcctgttctcctccgagacgaagttcaaggacctgggcctggtc
atcgtcgacgaggagcagcgcttcggcgtcgagcacaaggagcagctgaagaagctccgc
gccaacgtggacgtcctgacgatgtcggcgacgccgatcccgcgcacgctggagatggcg
gtcacgggcatccgcgagatgtcgacgatcacgacaccgcccgaggagcgccacccggtc
ctgaccttcgtcggtccgtacgaggagaagcagatcggcgcggccatccgccgcgagctg
ctgcgcgaggggcaggtcttctacatccacaaccgcgtggagtcgatcgaccgcgcggcg
gcccgccttcgcgacatcgtccccgaggcccgcatcgcgacggcccacggccagatgtcc
gaacaggccctggaacaggtggtcgtggacttctgggagaagaagttcgacgtcctggtc
tccacgacgatcgtcgagtcgggcatcgacatctccaacgccaacacgctgatcgtcgag
cgcggcgacaacttcggcctgtcccaactccaccagctgcgcggccgcgtgggccgaggc
cgcgagcgaggctacgcgtacttcctctaccccccggagaagccgctcacggaaacggcc
cacgagcgcctcgccaccatcgcccagcacaccgagatgggcgcgggcatgtacgtcgcg
atgaaggacctggagatccgcggagccggaaacctcctcggcggcgagcagtcgggccac
atcgcgggcgtcggcttcgacctctacgtacgcatggtgggcgaggcggtcgccgactac
cgcgcgtccctggagggcggtgtcgaggaggagccgcccctggaggtcaagatcgagctc
ccggtcgacgcgcacgtcccgcacgactacgcccccggcgagcgcctgcgcctggcggcc
taccgcgccatcgcctccgccaacacggaggaggacgtcaaggcggtccgcgaggaactc
accgaccgctacggcaagttgccggagccggtggagaacctcctcctcgtcgcgggcctg
cggatgctggcgcgggcgtgcggcgtgggcgagatcgtccttcagggcaacaacatccgc
ttcgccccggtggacctgcgcgaatcccaggagctgcgcctgaagcggctctaccccggg
acggtcatcaaggcgaacgccaaccaggtcctcgtcccccgcccgaagacggcgaaggtc
ggcggaaagccgctggtcggacgcgaactgctgggctgggtgggggagttcctgacgtcg
atcctggggtcgtag
DBGET
integrated database retrieval system
