Sanguibacter keddieii: Sked_11390
Help
Entry
Sked_11390 CDS
T01214
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ske
Sanguibacter keddieii
Pathway
ske03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ske00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sked_11390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ske03019
]
Sked_11390
03009 Ribosome biogenesis [BR:
ske03009
]
Sked_11390
Enzymes [BR:
ske01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Sked_11390
Messenger RNA biogenesis [BR:
ske03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Sked_11390
Ribosome biogenesis [BR:
ske03009
]
Prokaryotic type
rRNA processing factors
Sked_11390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ACZ21083
UniProt:
D1BDM1
LinkDB
All DBs
Position
1318648..1322445
Genome browser
AA seq
1265 aa
AA seq
DB search
MTLDPTNTTEPTDATAKKPARRRVTRPAAAPAAEAGDSTKDATSSEAPRSTSTTSAPAAE
TAAPAPKTRSRRATSAKKTVETSTAPAAEAAAAEPAAAPAAAQSAAPTEAATSTEAAAPA
KAPRRSRRVTKTTEQLDVFAELSGPTSAPAAAASTAPAAAETAPAAVDTTAAVDTPAAAE
TTAPTEDAAPRRRTRAATRKASAPASAAAPASQETEPTAGTTAPAPVSDAPAEAPARAPR
RSRSRAAAPATTPTHEDEVASLDVVASIEALATEPASKPARRSRKAASAPATALFEDAEV
SRPRRAATRAASAPAAVEAEQTAPAAEAGSTSTSTSDVPAVTATEPQADAPRKTRSRRAR
SAEPESRQAPAEPASAERDHQVAEPEAETVAEAPARRTTALLFQAPDPDAGRPRRRRAQS
PAGPPKAISEAAAAVEVEEDEDEATTDEALVAAQDQDLAGSDEVTTDESSDADDTDDADD
SDGSDDADTDGSGAPRRRRRRGGRGRRNRGGNDQRDEDDRDSRRDDDAEGDDDSDDSTDD
SGDTHTGSSDEGSRGEGGRSRSRRRSRGAAQQQTSDSDDDEPEGSEDSDDHDSDDSDDSA
SSRRRRRRRRGSRGSDSDSAPSSPAAGRSQGGSSRSGRTGSDEVTALKGSTRLEAKRQRR
REGRDAGRRRSIITEAEFLARRESVERSMIVRERNGRTQIAVLEDGVLVEHYVSQQSQAS
MAGNVYLGRVQNVLPSMEAAFIDVGKGRNAVLYAGEVNWDAAGMEGQPRRIEQALKSGDS
VLVQVTKDPIGQKGARLTSQVTLAGRYLVYVPGGGMTGISRKLPDTERARLKKILREVVP
ETAGVIVRTAAEGASEEELRADIARLQGQWEAIEKKSKTASAPALLQGEPDLAIRVVRDI
FNDDFTSLTVSGDGAWSEISEYVNALAPDLAERVKRWTSDKDVFAEARIDEQLAKGMDRK
VWLPSGGSLVIDRTEAMTVVDVNTGKFTGSGGTLEETVTRNNLEAAEEIVRQLRLRDIGG
IIVVDFIDMVLESNRDLVLRRMVECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFS
ETCDHCNGRGFIVHDEPNEKHFQGGSQPSGAQVAAQSSAPADGGDSKRSRRKRGGAKETE
STTVPVLPEAREAVKATLATIAAAAAHAHEHDDEHGHAAGSAEQGELAVVEVTVVETEQV
VDEVEQAEPADDVTVGEQATETETGAEDSDEQEPKRPVLDVVAELRSVRRPVSGRGRGAK
KADQD
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
gtgacgctcgaccccacgaacacgaccgaaccgaccgacgcgacagcgaagaagcccgcg
cgtcgccgcgtgacccgccccgccgccgcccctgcggccgaggccggagacagcaccaag
gacgccacgagcagcgaggcgccccgcagcacctcgacgacgagcgccccggctgccgag
accgccgcgccggcccccaagacccgcagccgacgtgccacgtccgcgaagaagacggtc
gagacctccacggctccggccgccgaggctgcagccgcagagcccgccgcggccccggcg
gcggcccagagcgccgcaccgaccgaggctgcgacctcgaccgaggccgctgcaccggcg
aaggccccgcgccgttcgcgccgggtcaccaagaccaccgagcagctcgacgtgttcgcc
gagctctccggcccgacgagcgcacccgctgccgctgcgagcaccgcgccggccgccgcg
gagaccgctcccgctgccgtcgacaccacggccgccgtcgacaccccggccgccgccgag
acgacggcgccgaccgaggacgccgcaccccgtcgtcgcacccgggcagcgacacgcaag
gcctcggcccctgcgtccgccgccgccccggcgtctcaggagaccgagccgaccgccggc
accacggccccggcacctgtgtccgacgccccggccgaggcgcctgcccgtgcaccgcgg
cgctcgcgctcgcgtgcggcggccccggccacgacgccgacccacgaggacgaggtcgcc
agcctcgacgtcgtggcctcgatcgaggccctcgccaccgagcccgcgtcgaagccggcc
cgtcgcagccgcaaggcggcctccgcgcccgcgaccgccctcttcgaggacgccgaggtc
tcccgcccccgtcgtgcggcgacccgcgccgcgtcggcccctgctgcggtcgaggccgag
cagacggcccccgccgccgaggcaggctcgacgagcacctcgaccagcgacgtgcctgcc
gtgaccgccacggagccgcaggcggacgcgccgcgcaagacgcgcagccgtcgtgcccgc
agcgccgagcccgagtcccgtcaggcaccggccgagcccgcctccgccgagcgcgaccac
caggtcgccgagcctgaggccgagacggtcgccgaggcccctgcccgtcgcaccactgct
ctgctcttccaggcacccgaccccgacgccgggcgtccccgacgtcgtcgggcccagtcg
cctgccggcccgcccaaggcgatctccgaggctgctgccgccgtcgaggtcgaggaggac
gaggacgaggccaccaccgacgaggcgctcgtcgccgcgcaggaccaggacctcgccggg
tccgacgaggtcacgacggacgagtcctccgacgctgacgacacggacgacgctgacgac
tccgacggctctgacgatgcggacaccgacggctcgggcgcgccccgacgtcgccgccgc
cgtggcggtcgtggacgccgcaaccgcggtggcaacgaccagcgtgacgaggacgaccgc
gactcccgtcgggacgacgacgccgagggcgacgacgactccgacgacagcaccgacgac
tcgggcgacacgcacaccggctcctcggacgagggctcgcgcggcgagggcgggcgctcg
cgctcgcgccgccggtcccgcggtgctgcccagcagcagacgtccgactccgacgacgac
gagcccgagggctcggaggactccgacgaccacgactccgacgactctgacgactcggcg
tccagccgtcgtcgtcgtcgccgccgtcgtgggtcgcgcgggtcggacagcgactcggcg
cccagcagccccgcggcggggcgcagccagggtggctcgagccgttccggccggaccggc
tcggacgaggtcaccgcgctcaagggctcgacgcgtctcgaggccaagcgccagcgccgc
cgcgaaggacgcgacgccggtcgtcgccgctcgatcatcaccgaggcggagttcctcgcg
cgtcgcgagtccgtcgagcgctcgatgatcgtccgcgagcggaacggtcgcacccagatc
gcggtgctcgaggacggcgtgctcgtcgagcactacgtgtcgcagcagtcgcaggcctcg
atggccggcaacgtctacctgggccgtgtccagaacgtcctgcccagcatggaggccgcg
ttcatcgacgtcggcaagggccgcaacgccgtcctctacgccggcgaggtcaactgggac
gccgcaggcatggaggggcagccccgacgcatcgagcaggcgctcaagtctggcgactcg
gtcctggtgcaggtcaccaaggacccgatcggccagaagggcgctcgcctgacctcgcag
gtcacgctcgccggccgctacctcgtctacgtgcccggtggtggcatgacggggatctcg
cgcaagctccccgacaccgagcgtgcgcgcctcaagaagatcctccgcgaggtcgtcccc
gagaccgcgggcgtcatcgtgcgcaccgccgccgagggggccagcgaggaggagctccgc
gctgacatcgcccggctccagggccagtgggaggccatcgagaagaagtcgaagaccgcg
tccgcgccggcgctcctccagggggagccggacctcgccatccgagtggtccgcgacatc
ttcaacgacgacttcacgtcgctgacggtctccggcgacggtgcctggtccgagatctcg
gagtacgtcaacgccctcgccccggacctcgccgagcgcgtcaagcgctggacgagcgat
aaggatgtcttcgcggaggcccggatcgacgagcagctcgccaagggcatggaccgcaag
gtctggctgccctcgggtggctcgctcgtcatcgaccggaccgaggccatgacggtcgtc
gacgtcaacaccggcaagttcaccggctctggcgggacgctcgaggagacggtcacgcgc
aacaacctcgaggccgccgaggagatcgtccgccagctccgcctgcgcgacatcggcggg
atcatcgtcgtggacttcatcgacatggtcctcgagtccaaccgcgacctcgtcctgcgc
cgcatggtcgagtgcctcggccgcgaccgcaccaagcaccaggtcgccgaggtcacctcg
ctcggcctcgtccagatgacccgcaagcgcgtgggccagggtctcgtcgaggccttcagc
gagacctgcgaccactgcaacggccgcgggttcatcgtccacgacgagccgaacgagaag
cacttccagggtggctcgcagccctcgggcgcccaggtcgccgcgcagtcctcggccccg
gccgacggcggcgacagcaagcgctcgcgccgcaagcgcgggggagccaaggagaccgag
agcaccacggtccccgtgctccccgaggcccgtgaggccgtcaaggcgaccctggcgacc
atcgccgcggccgcggcgcacgcccacgagcacgacgacgagcacggccacgcggccggg
tccgccgagcagggcgagctcgcggtcgtcgaggtgacggtcgtcgagaccgagcaggtc
gtggacgaggtcgagcaggccgagccggccgacgacgtcacggtcggcgagcaggcgacc
gagaccgagaccggggcagaggactccgacgagcaggagccgaagcggcccgtgctcgac
gtggtcgcagagctccggtcggtccgccgaccggtgtccggccgcggtcgtggcgccaag
aaggccgaccaggactga
DBGET
integrated database retrieval system
