Sanguibacter keddieii: Sked_18210
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Entry
Sked_18210 CDS
T01214
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ske
Sanguibacter keddieii
Pathway
ske03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ske00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sked_18210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ske03019
]
Sked_18210
03009 Ribosome biogenesis [BR:
ske03009
]
Sked_18210
Enzymes [BR:
ske01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sked_18210
Messenger RNA biogenesis [BR:
ske03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sked_18210
Ribosome biogenesis [BR:
ske03009
]
Prokaryotic type
rRNA helicases
Sked_18210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Cas3-like_C_2
Flavi_DEAD
FKRP_N
Helicase_RecD
CMS1
Motif
Other DBs
NCBI-ProteinID:
ACZ21747
UniProt:
D1BH27
LinkDB
All DBs
Position
complement(2027537..2029381)
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AA seq
614 aa
AA seq
DB search
MTSLDTTAPERAQNTPTENTVATSPVAEAITFADLGLPAELLSAVLDLGFTVPSTIQEKA
IPALLAGNDITGVAQTGTGKTAAFGLPMLAAVDPELRRTQALVLAPTRELAMQVAEAIET
FAKHLPGIEVVPVYGGSPYPPQARALSRGAQIVVGTPGRVIDHLERGTLKLGDIRFLVLD
EADEMLRMGFAEDVEKIFGAAPTERQVALFSATMPPQIRRVAQHHMRQPVEIAVSRQSST
VTSVTQQYAVVPFRHKVGSLTRVLATSDADAAIVFCRTRGAAEEVGSALIERGISAATIS
GDVAQKDREKIVERLRAGALDVLVATDVAARGLDVDRIGLVVNFDIPGEPEAYVHRIGRT
GRAGRTGVALSFVTPNERGRLKQIERTIRQQLVEIEIPSPADVSAHKVATLLGRVDARRD
AGRLSMYTDLVRTHLDTHGTDPAELAAILAALAVGDDGPQAREEEAAFEAQRAEARDARK
RRDDDRAPRERRDNDRPSRGVRRESTGTRYRLSVGHTHGAQPSGIVGALTNEGGLSGKDL
GKIDIFPSFSLVDISAPLDSETIDKISRARVAGKALRIKLDDGPAPTRTPRAGGAPAGRR
EERFDRKPRTEARY
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgacgtctcttgacaccactgcgcccgagcgcgcccagaacacccccaccgagaacacg
gtcgccacctcgcccgtcgccgaggccatcaccttcgcggacctgggcctgccggccgag
ctcctctccgccgtgctcgacctgggcttcaccgtcccgtcgaccatccaggagaaggcg
atccccgccctcctcgccggcaacgacatcaccggcgtcgcgcagaccggtaccggcaag
accgcggccttcggcctcccgatgctcgccgccgtcgaccccgagctccgccgcacccag
gccctcgtcctggccccgacccgcgagctcgccatgcaggtcgccgaggccatcgagacc
ttcgccaagcacctcccgggcatcgaggtcgtccccgtctacggtggctccccctacccg
ccccaggcccgcgccctctcccgcggtgcgcagatcgtcgtcggcacccccggccgcgtg
atcgaccacctcgagcgcggcaccctcaagctcggcgacatccgcttcctcgtcctcgac
gaggccgacgagatgctccgcatgggcttcgccgaggacgtcgagaagatcttcggcgcc
gcgccgaccgagcgtcaggtcgccctgttctccgcgaccatgcccccgcagatccgccgc
gtcgcgcagcaccacatgcgccagccggtcgagatcgccgtgtcgcgccagtcctcgacc
gtcacctcggtcacccagcagtacgccgtggtgccgttccgccacaaggtcggctcgctg
acccgcgtgctcgccacctccgacgccgacgccgcgatcgtcttctgccgcacccgtggc
gccgcagaagaggtcggctctgcgctcatcgagcgtggcatctcggccgcgaccatctcc
ggtgacgtcgcgcagaaggaccgcgagaagatcgtcgagcgcctgcgcgccggcgccctc
gacgtcctcgtcgcgaccgacgtggccgcccgtggcctcgacgtcgaccgcatcggtctc
gtcgtgaacttcgacatcccgggcgagcccgaggcctacgtccaccgcatcggccgcacc
ggccgtgccgggcgcaccggtgtcgcactgtccttcgtcaccccgaacgagcgcggacgc
ctcaagcagatcgagcgcaccatccgccagcagctcgtcgagatcgagatcccgtcgccc
gccgacgtctcggcccacaaggtcgccacgctcctcggacgcgtcgacgcccgtcgtgac
gccggtcgcctgtcgatgtacacggacctcgtccgcacccacctcgacacgcacggcacc
gacccggccgagctcgccgcgatcctcgcagccctcgccgtcggtgacgacggcccccag
gcccgtgaggaagaggcagccttcgaggcgcagcgcgccgaggcccgcgacgcccgcaag
cgtcgtgacgacgaccgcgccccccgcgagcgtcgcgacaacgaccgcccgtcacgaggc
gtccgccgcgagtcgaccgggacccgctaccgcctctcggtcggccacacgcacggcgcc
cagccgagcggcatcgtcggcgccctcaccaacgagggtggcctctcgggcaaggacctc
ggcaagatcgacatcttcccgtccttctcgctcgtcgacatcagcgcaccgctcgactcc
gagacgatcgacaagatctcgcgggcacgcgtcgccggcaaggcgctgcgcatcaagctc
gacgacggccccgcgccgacccgcaccccgcgtgccggcggtgcacctgccggtcgtcgc
gaggagcgcttcgaccgcaagccgcgcaccgaagcacgctactga
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