Sanguibacter keddieii: Sked_18500
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Entry
Sked_18500 CDS
T01214
Name
(GenBank) superfamily II RNA helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
ske
Sanguibacter keddieii
Brite
KEGG Orthology (KO) [BR:
ske00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ske03019
]
Sked_18500
Enzymes [BR:
ske01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Sked_18500
Messenger RNA biogenesis [BR:
ske03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Sked_18500
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
SH3_HelY
DEAD
ResIII
Helicase_C
DEXQc_Suv3
MTR4-like_stalk
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACZ21776
UniProt:
D1BH56
LinkDB
All DBs
Position
complement(2057741..2060659)
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AA seq
972 aa
AA seq
DB search
MAPPSRRRRSAPATPAAASTTRTGPSPAERYQQYRQRAELDSQQVSAFRQTLDFDLDDFQ
LEACAALERGHGVLVAAPTGAGKTIVGEFAIHLAVTGGRKAFYTTPIKALSNQKYADLVA
RYGAEHVGLLTGDTTINGEAPVVVMTTEVLRNMLYAASPTLDNLGFVVMDEVHYLADRFR
GSVWEEVIIHLAADVQLVSLSATVSNAEEFGDWLEMVRGDTTVVVSEHRPVPLTQHVAAA
RRGAAPGGLFDLYAHTVDPTAPGPNPPINPDLLALMRQGDSFRGGGGRGRGYRSARGQGG
PGGRSRDSARGSAGTTGRRGPARFTVVDELEQARLLPAIYFIFSRAGCEGAVAQCVGSGL
RLTTPEQELTIRGIVEARCANIPSEDLAVLGYWGWLDALTRGIAAHHAGMLPLFKETVEE
LFSAGLVKIVFATETLALGINMPARSVVLEKLVKWDGSSHVDLTPGEYTQLTGRAGRRGI
DVEGHAVVVDHPGLDPVVLAGLASKRLYPLKSSFAPTYNMAVNLVSQVGRERAREILETS
FAQFQADRGVVGLAKQAAASSEALDGYAEAMLCEQGDFREYMRLRKALSAREAELSKRAT
NERRSEVVRALESLRRGDLVEIPSGRRAGYALVLDPGSDGGFDGPRPTILSTDRQVKRLT
VADVPQGLRVVGEVRIPKTFNARNPGSRRDLVSSMNTRLGAFADTADGRVPKRSGSTRRG
AGDDAEVARIQAALRAHPCHSCPDRETHARWALRWESLDKEHKALMRRIEGRTGSIAKVF
DRICDVLRTLEYLERDEHGALVVTRAGESLKRLYAESDLLLAECLRRGVWDDLDPAGLAA
AVSTVVYSARRDDREEEPHVPGGPDGRLARALDETVRIWSALDDLEDAHRLEATGPLDMG
LVEAMHRWASGRSLDVVLKGTDLAAGDFVRWCKQVIDVLGQLTKASPQDHVRVTADKAID
ALRRGVVAYSSV
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggcacctccctcccgacgccgcaggtcggccccggccaccccggccgccgccagcacc
acccgcaccggcccgagccccgccgagcgctaccagcagtaccgccagcgcgccgagctc
gactcccagcaggtctccgcgttccgccagaccctcgacttcgacctcgacgacttccag
ctcgaggcctgcgccgcgctcgagcgcgggcacggcgtgctcgtggccgccccgaccgga
gcaggcaagaccatcgtcggcgagttcgccatccacctcgcggtgaccggcgggcgcaag
gcgttctacaccacgccgatcaaggccctgagcaaccagaagtacgccgacctcgtcgcc
cggtacggcgccgagcacgtcgggctgctcaccggcgacacgaccatcaacggcgaggcc
cccgtcgtcgtcatgaccaccgaggtcctgcggaacatgctctacgccgcgtcgcccacc
ctcgacaacctcggcttcgtggtcatggacgaggtccactacctcgccgacaggttccgc
ggctccgtctgggaagaggtcatcatccacctcgccgccgacgtgcagctcgtgtcgctg
tccgcgacggtctccaacgccgaggagttcggcgactggctcgagatggtccgcggcgac
acgaccgtcgtcgtcagcgagcaccgacccgtgccgctcacccagcacgtggctgccgca
cgacggggggccgctcccggcgggctcttcgacctctacgcgcacaccgtcgaccccacc
gccccggggcccaacccgcccatcaaccccgacctgctggccctcatgcgccagggcgac
tccttccgcggcggcgggggccgcggtcgcggctaccgcagcgcccgcggccagggcggc
cccggcggacgcagccgggacagcgcacggggctcggccgggacgaccggccgccgcggc
cccgcacggttcaccgtcgtcgacgagctcgagcaggcccgcctgctgcccgccatctac
ttcatcttctcccgcgccgggtgcgagggagccgtcgcgcagtgcgtcggctcggggctg
cggctgaccaccccggagcaggagctcaccatccgcgggatcgtcgaggcgcgctgcgca
aacatcccctccgaggacctcgccgtcctgggctactggggctggctcgacgccctgacc
cgcggcatcgccgcgcaccacgccggcatgctcccgctgttcaaggagaccgtcgaggag
ctcttcagcgccggtctcgtcaagatcgtcttcgcgaccgagaccctggccctcggcatc
aacatgcccgcgcgctccgtcgtcctcgagaagctcgtcaagtgggacggctcgtcgcac
gtcgacctcacgccgggggagtacacccagctcaccgggcgcgccggacgtcgcggcatc
gacgtcgaggggcacgccgtggtcgtcgaccaccccggcctcgacccggtggtcctcgcc
ggcctcgcctccaagcgcctctaccccctgaagtccagcttcgcgcccacctacaacatg
gccgtcaacctcgtgtcccaggtgggccgcgagcgcgcccgcgagatcctcgagacgtcc
ttcgcgcagttccaggcagaccgcggcgtggtgggcctggccaagcaggcggcggcgagc
tcggaggcgctcgacggctacgccgaggcgatgctctgcgagcagggcgacttccgcgag
tacatgcggctgcgcaaggcgctgtcggcgcgcgaggccgagctgtcgaagcgtgcgacg
aacgagcgccgcagcgaggtcgtgcgggcgctcgagtcgctgcgccgtggtgacctcgtc
gagatcccgtcggggcgccgggccgggtacgcgctcgtgctcgacccggggtcggacggc
ggcttcgacgggccgcgcccgacgatcctcagcaccgaccgccaggtgaagaggctgacc
gtggccgacgtcccgcaggggcttcgggtggtgggtgaggtgcggatccccaagaccttc
aacgcccgcaaccccggctcacgacgggacctcgtgtcgtcgatgaacaccaggctgggc
gcgttcgcggacaccgctgacgggcgcgtgcccaagcgttccggctcgacgcgtcgtggc
gcgggcgacgacgcggaggtggcgcggatccaggcggccctgcgggcgcacccctgccac
tcgtgccccgaccgcgagacgcacgcgcggtgggcgctgcggtgggagtccctcgacaag
gagcacaaggcgctgatgcgtcgcatcgagggacgcacggggtcgatcgcgaaggtgttc
gaccgcatctgcgacgtgctgcggacgctggagtacctcgagcgggacgagcacggcgcg
ctcgtggtgacccgtgcgggggagagcctcaagcggctgtacgcggagagcgacctgctg
ctggccgagtgcctgcgtcgcggggtctgggacgacctcgaccccgcgggcctggcggcg
gcggtgtcgacagtcgtgtactcggcgcgccgggacgaccgtgaggaggagccgcacgtg
ccgggtggtccggacgggcggctggcccgcgcgctcgacgagacggtgcggatctggtcg
gctctcgacgacctcgaggacgcgcaccggctcgaggcgacgggtccgctcgacatgggg
ctggtcgaggcgatgcaccgctgggcgtcggggcgcagcctcgacgtggtgctcaagggc
accgacctcgctgcgggagacttcgttcggtggtgcaagcaggtgatcgacgtcctcggg
cagctcaccaaggcctcgccgcaggaccacgtccgggtcaccgcggacaaggcgatcgac
gcgctgcgccggggcgtggtggcgtactcgagcgtgtag
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