Sanguibacter keddieii: Sked_18990
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Entry
Sked_18990 CDS
T01214
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ske
Sanguibacter keddieii
Brite
KEGG Orthology (KO) [BR:
ske00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ske03019
]
Sked_18990
Enzymes [BR:
ske01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Sked_18990
Messenger RNA biogenesis [BR:
ske03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Sked_18990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_19
AAA_22
AAA_30
AAA_16
ResIII
HA2_N
AAA_11
ParA
nSTAND3
Helicase_RecD
RoxA-like_Cyt-c
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
ACZ21824
UniProt:
D1BHA4
LinkDB
All DBs
Position
complement(2108053..2110572)
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AA seq
839 aa
AA seq
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MPADPIARLLADPPDLPVRSALPALADAVRDRGVVVVQAPPGTGKTTLVPPALADLLGAG
RVVVTQPRRVAARAAARRLAQLLGEPLGQTVGYSVRGESTTSASTRVEVVTTGVLLRRLQ
RDPGLDGVTAVVLDECHERQLDADLALALLVDVRANLRDDLVLVAMSATVEAERTAAVVG
GDGPAAPVVTVPGALHPVTQVWAPPPARVTALDERGVTPAFLDHVVATTRRALDERPGDV
LVFVPGAREVDVVARGLAGVEADVRPLHGRLPAAQQDLALSAGPRRRVVVSTVVAESSLT
VPGVRTVVDAGLSREPRVDHRRGLSGLVTVRGSRASAEQRAGRAGREGPGAVYRCWSEAD
HVRLVAHPVPEILTADLTSFALELSCWGSPDGTALALMDAPPAAASAVARQTLVSLGAVE
ADGTVTARGRQIAGVPVDPRLARALLDGADAVGPRAAAEVVALLSEDVRAPGGDLVAAVR
GLRAGTLPAPTWKSQVTRLEALARRSGPARGLATRGSAGGRRAGLSLDLTVGLVVALAHP
DRVARRRPKGSTYLMVSGTGAALAPGSSLTGYDWVAVADADRGAGRRDATVRSAAPLDED
LALDAASSALHDDATVTWTDGRVVARRTTSLGAIELTSDRLTDPPRDQVVAAVRDGLARD
GLDALPWRESAVALRARLDFLHRALGEPWPDVSDQALLDGLDRWLGPDLDRVRRADDLRR
LDVTSALRRLLPWPEAGRLDELAPERVTAPSGTGVRVDYSGDQPVAALKVQEAFGWKEAP
RLAGGRVPLLLHLLSPARRPAAVTADLASFWSTGYPQVRAELRRRYPKHAWPEDPFAAR
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgccgacccgatcgcccgactcctcgccgacccacccgacctccccgtccgcagc
gccctcccggcgctcgccgacgccgtccgcgaccgcggggtcgtcgtggtccaggcacca
cccgggaccggcaagaccacgctcgtgccaccggcgctcgcggacctgctcggcgcaggc
cgcgtggtcgtcacgcagccccggcgggtcgccgcacgcgcagcagcccgccgcctcgcg
cagctcctcggcgagccgctcggccagaccgtcggctactcggtccggggagagtcgacc
accagcgcgagcacccgggtggaggtggtcaccaccggtgtgctgctgcgccgcctgcag
cgcgacccgggcctcgacggcgtcaccgccgtggtgctcgacgagtgccacgagcgccag
ctcgacgccgacctcgccctcgcgctcctcgtcgacgtgcgcgccaacctccgcgacgac
ctcgtgctcgtcgccatgtccgcgaccgtcgaggcagagcgcaccgcggctgtcgtcggc
ggcgacgggcctgccgccccggtcgtcacggtgccgggcgcgctgcaccccgtgacgcag
gtctgggctccgccgccagcccgcgtcaccgccctcgacgagcggggtgtcacgcccgcg
ttcctcgaccacgtggtcgccaccacccggcgcgccctcgacgagcggccgggggacgtg
ctcgtgttcgtgccaggggcacgcgaggtcgacgtcgtcgcccgaggccttgccggggtc
gaggccgacgtgcggccgctgcacggccggctccccgccgcgcagcaggacctcgccctg
agcgcggggcctcgtcggcgcgtggtggtctcgaccgtggtggccgagtcgtcgctcacc
gtccccggggtccgcacggtcgtggacgcgggcctgtcccgcgagccgcgggtcgaccac
cgccgggggctgtccgggctggtgaccgtccggggcagccgggcctcggccgagcagcgt
gcggggcgtgccggacgtgaagggccgggagcggtgtaccgctgctggagcgaggccgac
cacgtccggctcgtcgcgcacccggtcccggagatcctcaccgccgacctcacgtccttc
gcgctcgagctctcctgctggggctcgcccgacggcacggcgctcgcgctcatggacgcc
ccgcccgccgcggcgagcgccgtggcccgccagacgctcgtcagcctcggcgcggtcgag
gccgacgggaccgtcacggcccgaggacggcagatcgccggggtcccggtcgacccgcgc
ctggcccgcgccctcctcgacggagccgacgccgtcggcccgcgcgccgcggccgaggtg
gtcgcgttgctctccgaggacgtccgcgccccgggcggcgacctcgtcgcggccgtccgc
gggctgcgcgccgggaccctcccggcgccgacgtggaagagccaggtgacccgtctcgag
gcgctcgcacggcgcagcggaccagcgcgggggcttgccacccgcggcagcgccggaggc
cggcgggccgggctcagcctcgacctgacggtcgggctcgtcgtcgccctcgcgcacccg
gaccgggtcgcccgacggcgccccaagggctcgacctacctcatggtgtccggcaccgga
gccgcgctcgccccgggctcttcgctcaccggctacgactgggtcgcggtggccgacgcc
gaccgtggagcagggcgccgcgacgcgacggtccgctcggccgccccgctcgacgaggac
ctcgccctcgacgccgcgtcctccgcactgcacgacgacgccacggtcacctggaccgat
ggccgcgtcgtcgcgcgccgcaccacgtcgctcggcgccatcgagctgacctccgaccgg
ctcaccgacccgccccgcgaccaggtggtcgccgccgtccgcgacgggctggcccgcgac
ggcctcgacgcgctgccctggcgcgagtccgccgtcgcgctgcgcgcccggctggacttc
ctgcaccgagccctcggcgaaccctggcccgacgtgagcgaccaggcgctgctcgacggc
ctcgaccggtggctgggccccgacctcgaccgggtgcgccgcgccgacgacctccggcgg
ctcgacgtcacctcggcgctgcgacggctcctgccctggcccgaggccggacggctcgac
gagctcgcgcccgagcgcgtcaccgcaccgtccggcacaggcgtccgggtcgactactcc
ggcgaccagcccgtcgccgcgctcaaggtgcaggaggccttcgggtggaaggaggcaccc
cggctcgccggcggcagggtgcccctgctgctccacctgctttcaccggcccgacgcccc
gccgcggtcaccgccgacctcgcgtccttctggtccaccgggtacccgcaggtcagggca
gagctccggcgccgctaccccaagcacgcctggcccgaggaccccttcgcggcgcgctga
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