Sanguibacter keddieii: Sked_22680
Help
Entry
Sked_22680 CDS
T01214
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ske
Sanguibacter keddieii
Pathway
ske03030
DNA replication
ske03430
Mismatch repair
ske03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ske00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Sked_22680
03430 Mismatch repair
Sked_22680
03440 Homologous recombination
Sked_22680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ske03032
]
Sked_22680
03400 DNA repair and recombination proteins [BR:
ske03400
]
Sked_22680
Enzymes [BR:
ske01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Sked_22680
DNA replication proteins [BR:
ske03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Sked_22680
DNA repair and recombination proteins [BR:
ske03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Sked_22680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
OB_MCM10
DUF655
Motif
Other DBs
NCBI-ProteinID:
ACZ22183
UniProt:
D1BIK6
LinkDB
All DBs
Position
complement(2520842..2524387)
Genome browser
AA seq
1181 aa
AA seq
DB search
MSSAPPRSEDFVHLHVHTEYSMLDGAARLGDLFEETKRVGQSAIATTDHGYLFGAYDFWK
QATDAGVKPIIGVEAYVTPGTSRFDNTRVRWGDASQASDDVSARGAYTHLTMWARNNEGM
HNLFRASSLASLEGQMGKWPRMDRDLLERYSPGLIASTGCPSGEVQTRLRLGHYDEAVKA
AGELQDIFGKEYFYVELMDHGLDIETRVFKDLLRLAKDIGAPIVATNDLHYVRQEDSGSQ
EALLAINSGSTLTDPDRFKFDGDGYYVKSAAEMRRLWKELPEACDNTLVIAEQCEVSFNT
AANYMPNFPAPAGEDETSWFIKEVETGLQYRYPDGIPTEVRERADFETKVITQMGFPGYF
LVVADFINWSKDNNIRVGPGRGSGAGSMVAYAMRITDLDPLVHGLIFERFLNPDRVSMPD
FDVDFDERRRGEVIRYVTDKYGEDRVAQIVTYGTIKAKQALKDSSRLLGLPYAMGDKLTK
AMPPAIMGKDISLTGIFDPDDKRYSEAEEFRQVHAADPEAQRVVELAKGIEGLKRQWGVH
AAGVIMSSEPLIDIIPIMRRLQDGAVITQFDYPKCEELGLIKMDFLGLRNLTILDDALEN
IVMNGKEAIDLESLTLDDPNTYALLSRGDTLGVFQLDGGGMRTLLKLMRPDNFEDISAVG
ALYRPGPMGANSHTNYALRKNGLQEVVPIHPELEEPLAEVLGTTHGLIVYQEQVMSIAQI
VAGFSLGQADILRRAMGKKKKSELDKQFEGFSGGMVERGYSMAAVKALWDILLPFSDYAF
NKAHSAAYGVVSYWTAFLKANYPTEYMAALLTSVRDDKDKSALYLNECRRMGITVLPPDV
NSSSANFTAVGKDIRFGLTAVRNVGANVVEAIVTTREAKQNFTSFTDFLDKVPAVVCNKR
TIESLIKAGAFDSLDHPRRALQVVHEQAVDSVIGVKRKEAEGQFDLFAGFGDEADDGMSF
SVDIPDLPDWEKKQLLAFEREMLGLYVSDHPLSGLEHVLQQAAEVSIAKLLTDEDRPDGS
TVVIAGLITSLQRKMSKQGNPWAAVTIEDLDGGVEVMFFGETYMAYSTILAEDQVVVLRG
RVRRRDDTMQLQAMEVSLPDISTGTDSPLIITIPRNRCLEQIVVRLRDALKTHPGDAQVR
IHVTEPGKTTVVQAHDQFRVSKSSALSGELKALLGPACLTV
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtctgcgccccctcgttctgaggacttcgtccacctgcacgtgcacaccgagtat
tcgatgctcgacggggcggcccgcctcggggacctcttcgaggagaccaagagggtcggc
cagagcgcgatcgcgacgaccgaccacgggtacctcttcggggcgtatgacttctggaag
caggcgaccgacgcgggcgtgaagcccatcatcggtgtcgaggcgtacgtcacccctggg
acgtcgcgcttcgacaacacccgtgtgcgctggggcgacgcgagccaggcgagcgacgac
gtctccgcccgtggtgcgtacacccacctgacgatgtgggcccgcaacaacgaggggatg
cacaacctcttccgggcgagctccctcgcctccctcgaggggcagatgggcaagtggccc
cgcatggaccgggacctgctcgagcggtacagcccaggtctcatcgcgtcgaccgggtgc
ccctcgggcgaggtccagacgcgtctgcggctcggtcactacgacgaggccgtgaaggct
gccggtgagctccaggacatcttcggcaaggagtacttctacgtcgagctcatggaccac
gggctcgacatcgagacgcgcgtcttcaaggacctgctgcgcctcgccaaggacatcggc
gccccgatcgtggcgaccaacgacctgcactacgtgcgccaggaggacagcggctcgcag
gaggcgctgctcgccatcaactcgggctcgaccctcaccgacccggaccgcttcaagttc
gacggcgacggctactacgtcaagtccgccgcagagatgcgccgcctctggaaggagctc
ccggaggcctgcgacaacacgctcgtcatcgccgagcagtgcgaggtctcgttcaacacg
gctgccaactacatgccgaatttcccggccccggcgggcgaggacgagacgtcctggttc
atcaaggaggtcgagaccggtctgcagtaccggtacccggacgggatcccgaccgaggtg
cgcgagcgcgccgacttcgagaccaaggtcatcacccagatgggcttcccggggtacttc
ctcgtggtcgccgacttcatcaactggtccaaggacaacaacatccgtgtgggacccggc
cgcggttcgggtgccgggtcgatggtcgcgtacgcgatgcgcatcaccgacctcgacccg
ctcgtccacggtctgatcttcgagcgcttcctcaacccggaccgcgtctccatgcccgac
ttcgacgtcgacttcgacgagcgtcgccgcggcgaggtgatccggtacgtcaccgacaag
tacggcgaggaccgcgtcgcgcagatcgtcacctacggcaccatcaaggccaagcaggcg
ctcaaggactcgagccgcctcctcggcctgccctacgccatgggcgacaagctcaccaag
gcgatgccgccggcgatcatgggcaaggacatcagcctcaccgggatcttcgacccggac
gacaagcgctactcggaggcggaggagttccgccaggtccacgcagccgaccccgaggcg
cagcgcgtcgtggagctcgccaagggcatcgagggcctgaagcgccagtggggcgtccac
gcggccggcgtcatcatgtcgagcgagccgctcatcgacatcatcccgatcatgcgccgc
ctgcaggacggcgccgtcatcacgcagttcgactaccccaagtgcgaagagctcgggctc
atcaagatggacttcctggggttgcgcaacctcaccatcctcgacgacgccctcgagaac
atcgtcatgaacggcaaggaggcgatcgacctcgagagcctcaccctcgacgacccgaac
acctacgccctgctctcccgaggggacacgctgggcgtgttccagctcgacggcggcggc
atgcgcacgctgctcaagctcatgcgtcccgacaacttcgaggacatctcggccgtcggt
gcgctctaccgtccggggccgatgggtgcgaactcgcacaccaactacgcgctccgcaag
aacggcctgcaggaggtcgtcccgatccacccggagctcgaggagccgctcgccgaggtc
ctcgggaccacgcacggtctcatcgtgtaccaggagcaggtcatgtcgatcgcgcagatc
gtcgccgggttctcgctcggccaggcagacatcctgcgtcgtgccatgggcaagaagaag
aagtccgagctggacaagcagttcgagggcttctcgggcggcatggtcgagcgcggctac
tccatggccgcggtcaaggcgctgtgggacatcctgctgccgttctccgactacgcgttc
aacaaggcccactcggccgcgtacggcgtggtctcgtactggacggcgttcctcaaggcg
aactacccgaccgagtacatggcggcgctgctcaccagcgtccgcgacgacaaggacaag
tcggcgctgtacctcaacgagtgccggcgcatgggcatcacggtgctgccgccggacgtc
aactcgtcgtcggcgaacttcaccgccgtcggcaaggacatccgcttcgggctgacggcc
gtccgcaacgtgggggcgaacgtcgtcgaggcgatcgtcaccacgcgggaggcgaagcag
aacttcacgtccttcacggacttcctcgacaaggtcccggcggtggtctgcaacaagcgg
accatcgagtcgctcatcaaggccggggccttcgactcgctcgaccacccccgccgcgcg
ctccaggtggtccacgagcaggcggtggactcggtgatcggcgtcaagcgcaaggaggcc
gaggggcagttcgacctcttcgccggcttcggcgacgaggcggacgacgggatgtcgttc
agcgtggacatcccggacctgcccgactgggagaagaagcagctgctcgccttcgagcgg
gagatgctcgggctctacgtctcggaccacccgctctccgggctcgagcacgtgctgcag
caggccgccgaggtgtcgatcgccaagctgctcaccgacgaggaccgcccggacggctcg
accgtcgtcatcgccggtctcatcacctcgctccagcgcaagatgtccaagcagggcaac
ccgtgggccgcggtgaccatcgaggacctcgacggcggcgtcgaggtgatgttcttcggc
gagacgtacatggcctactccacgatcctcgccgaggaccaggtggtggtgctgcgcggt
cgcgtgcgccgccgggacgacaccatgcagctccaggccatggaggtgtcgctgcccgac
atctcgacggggaccgactcgccgctgatcatcacgatcccgcggaaccggtgcctcgag
cagatcgtggtcaggctgcgtgacgcgctcaagacgcacccgggcgacgcccaggtacgg
atccacgtcaccgagccggggaagacgaccgtggtccaggcgcacgaccagttcagggtg
tcgaagtcctcggcgctgtcaggcgagctcaaggccctgctgggacccgcctgcctcacc
gtgtga
DBGET
integrated database retrieval system
