Sanguibacter keddieii: Sked_23380
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Entry
Sked_23380 CDS
T01214
Name
(GenBank) guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ske
Sanguibacter keddieii
Pathway
ske03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ske00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sked_23380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ske03019
]
Sked_23380
03016 Transfer RNA biogenesis [BR:
ske03016
]
Sked_23380
Enzymes [BR:
ske01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Sked_23380
Messenger RNA biogenesis [BR:
ske03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Sked_23380
Transfer RNA biogenesis [BR:
ske03016
]
Prokaryotic type
tRNA degradation factors
Sked_23380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
KH_2
KH_KhpA-B
S1_RRP5
KH_5
Motif
Other DBs
NCBI-ProteinID:
ACZ22253
UniProt:
D1BJ59
LinkDB
All DBs
Position
complement(2602168..2604375)
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AA seq
735 aa
AA seq
DB search
MEGPEIEFEEAVIDNGRFGTRTVRFETGRLARQAAGSAAAYLDGETMLLSATTVGKHPKD
QFDFFPLTVDVEERMYAAGRIPGSFFRREGRPSTEAILTCRLIDRPLRPTFVKGLRNEVQ
VVVTVLAAHPDDAYDTLAINVASLSTQLSGLPFSGPVGAVRIALVDGQWVAFPKYSDKEK
AVFDMVVAGRVAGDDVAIMMVEAEATDNSWTLIKDEGVAAPTEEVVAEGLEASKVFIRQL
CEAQAALAARAAKPVREFPLFLDYQDDAYAAIEAQVATPLGQALTIADKQDRENRLDEIK
AEALEALAGQFEGREKELSAAVRSVTKKLIRQRVLTDGVRIDGRGLADIRTLSAEVEVVP
RVHGSAIFERGETQIMGITTLNMLRMEQQIDSLGPETRKRYMHNYNFPPYSTGETGRVGS
PKRREIGHGALAERALVPVLPTREEFPYAIRQVSEALSSNGSTSMGSVCASTLSLLNAGV
PLRAPVAGIAMGLISDTVDGKPRYAALTDILGAEDAFGDMDFKVAGTREFVTAIQLDTKL
DGIPASVLGGALTQARDARFAILDVLGEAIDVPDEMSPHAPRVIAVKVPVDKIGEVIGPK
GKMINQIQEETGADISIEDDGTVYIGATDGPSAEAARAAINAIANPHVPEVGERFVGTVV
KIAPFGAFISLSPGKDGLLHISQIRKLVGGKRVENVEDVLSIGQKVQVEIGEVDPRGKLS
LHAVVDEAEAGQADT
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
gtggagggtcccgagatcgagttcgaagaagcagtcatcgacaacgggcgcttcggcacc
cgcaccgtccgtttcgagacgggccgcctggcccgccaggcagccggctcggccgccgcg
tacctcgacggcgagacgatgctgctgtcggccaccacggtcggcaagcaccccaaggac
cagttcgacttcttcccgctgacggtcgacgtcgaagagcgcatgtacgccgcgggacgc
atccccggctcgttcttccgccgcgagggtcgccccagcacggaggccatcctcacgtgc
cgcctcatcgaccgcccgctccgcccgaccttcgtcaagggcctgcgcaacgaggtccag
gttgtcgtgaccgtcctcgccgcacaccctgacgacgcgtacgacaccctcgcgatcaac
gtcgcgtcgctgtccacccagctctccggcctgccgttctccggcccggtcggcgcggtg
cgcatcgccctcgtcgacggccagtgggtcgcgttccccaagtactccgacaaggagaag
gccgtcttcgacatggtcgtcgccggtcgtgtcgccggggacgacgtcgcgatcatgatg
gtcgaggccgaggccaccgacaactcctggaccctcatcaaggacgagggcgtcgccgcc
ccgaccgaggaggtcgtggccgagggcctcgaggcctcgaaggtcttcatccgtcagctc
tgcgaggcgcaggccgcgctcgccgcccgcgctgccaagccggtccgcgagttcccgctg
ttcctcgactaccaggacgacgcctacgccgcgatcgaggcgcaggtcgccacgccgctc
ggccaggcgctcaccatcgcggacaagcaggaccgcgagaaccgcctcgacgagatcaag
gcagaggccctcgaggccctcgccggtcagttcgaggggcgcgagaaggaactgtccgca
gccgtccgctccgtcaccaagaagctcatccgccagcgcgtcctcaccgacggcgtccgg
atcgacggtcgtgggctcgcggacatccgcaccctctcggccgaggtcgaggtcgtcccc
cgcgtgcacggctccgcgatcttcgagcgtggcgagacccagatcatgggcatcaccacc
ctcaacatgctccgcatggagcagcagatcgactcgctcggcccggagacgcgcaagcgc
tacatgcacaactacaacttcccgccgtactcgaccggtgagaccggccgtgtgggaagc
cccaagcgtcgtgagatcgggcacggtgccctcgccgagcgcgccctcgtccccgtcctg
ccgacccgcgaggagttcccctacgcgatccgtcaggtctccgaggcgctcagctccaac
gggtccacctcgatgggctccgtctgcgcctcgaccctctcgctgctcaacgccggtgtg
ccgctgcgcgccccggtcgccggcatcgcgatgggcctcatctccgacacggtcgacggg
aagccccgctacgcggcgctcaccgacatcctcggagccgaggacgccttcggcgacatg
gacttcaaggtcgccggtacccgtgagttcgtcacggccatccagctcgacacgaagctc
gacggcatccccgcgtcggtcctcggcggcgcgctgacccaggcccgcgacgcccgcttc
gccatcctcgacgtgctcggcgaggccatcgacgtgcccgacgagatgagcccgcacgct
cctcgcgtcatcgcggtcaaggtccccgtggacaagatcggcgaggtcatcggcccgaag
ggcaagatgatcaaccagatccaggaggagacgggcgcggacatctccatcgaggacgac
ggcaccgtgtacatcggtgccaccgacggcccctccgcagaggccgcccgcgcagcgatc
aacgcgatcgccaacccccacgtgcccgaggtgggcgagcgcttcgtcgggacggtcgtc
aagatcgctcccttcggtgccttcatctccctctcgccgggcaaggacgggctgctgcac
atcagccagatccgcaagctcgtcggtggcaagcgcgtggagaacgtcgaggacgtcctg
tccatcggccagaaggtccaggtcgagatcggcgaggtcgacccgcgcggcaagctgtcg
ctgcacgccgtggtcgacgaggccgaggctgggcaggctgacacctga
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