Sanguibacter keddieii: Sked_24670
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Entry
Sked_24670 CDS
T01214
Name
(GenBank) topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ske
Sanguibacter keddieii
Brite
KEGG Orthology (KO) [BR:
ske00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ske03032
]
Sked_24670
03400 DNA repair and recombination proteins [BR:
ske03400
]
Sked_24670
Enzymes [BR:
ske01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Sked_24670
DNA replication proteins [BR:
ske03032
]
Prokaryotic type
DNA Topoisomerases
Sked_24670
DNA repair and recombination proteins [BR:
ske03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Sked_24670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
TetR_C_16
Motif
Other DBs
NCBI-ProteinID:
ACZ22379
UniProt:
D1BJX0
LinkDB
All DBs
Position
2749208..2750203
Genome browser
AA seq
331 aa
AA seq
DB search
MPRLRRVSVSQPGLTRRRSGTGFTYLDAAGKRITEPAVLERCRELVVPPAWEDVWICPYP
NGHVQAYGIDAAGRGQYLYHPQWRARRDRAKHDHALAVGARLPEAREQVDSDLQRSGMPR
EKALAVVFRLLDVGLFRIGGETYAAKNDSHGVSTLLRSHVTARRDGTVRFQFPAKSGKDQ
DIVIEDAEVHAAVRTFLRRKDESDRLVAWRGPGSPAQWHTVSSADVSGYVKERLGSDASA
KVFRTWHATVLAAQLLEAAGPPPASERKRRTVATGVVRTVADQLGNTPTVARASYIDPRL
FDHWERGSTIPECSSRDEAEAAVITLLGDGS
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atgccccgactccgccgcgtctccgtctcccagccgggtctgacccgccggcgcagcggg
acgggcttcacctacctggacgccgccgggaagcggatcaccgagcctgccgtcctcgag
cggtgccgcgagctcgtggtgccgcccgcgtgggaggacgtgtggatctgcccgtacccc
aacgggcacgtccaggcctacggcatcgacgcggccggtcgaggccagtacctctaccac
ccgcagtggagggcccggcgagaccgggccaagcacgaccacgccctcgcggtcggcgcc
cgcctgccggaggcccgtgagcaggtggacagcgacctgcagcgctcggggatgccccgg
gagaaggcgctggccgtcgtcttccggctcctcgacgtaggcctgttccggatcggcggc
gagacctacgccgcgaagaacgacagccacggggtctcgacgctgctgcgctcccacgtc
acggcgcgccgggacgggaccgtccggttccagttcccggcgaagtccggcaaggaccag
gacatcgtcatcgaggacgccgaggtgcacgcggccgtccgcaccttcctccgacgcaag
gacgagtcggaccgcctcgtcgcctggcgaggacccggcagcccggcgcagtggcacacg
gtctcgtcggcggacgtctcgggctacgtcaaggagcggctcgggtcggacgcgagcgcc
aaggtcttccgcacctggcacgcgaccgtgctcgccgcgcagctgctcgaggcggccggt
ccgcctccggcctccgagcgcaagcgacggaccgtcgccaccggtgtcgtgcgcaccgtg
gccgaccagctcggcaacaccccgaccgtcgcccgggcctcgtacatcgacccgcgtctg
ttcgaccactgggaacgcgggtcgaccatcccggagtgcagcagccgggacgaggccgag
gcggccgtgatcacgctcctcggcgacggaagctga
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