Sanguibacter keddieii: Sked_29820
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Entry
Sked_29820 CDS
T01214
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ske
Sanguibacter keddieii
Pathway
ske03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ske00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Sked_29820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ske03021
]
Sked_29820
03400 DNA repair and recombination proteins [BR:
ske03400
]
Sked_29820
Enzymes [BR:
ske01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Sked_29820
Transcription machinery [BR:
ske03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Sked_29820
DNA repair and recombination proteins [BR:
ske03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Sked_29820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TraF_2
DUF4407
TarH
Cluap1
Motif
Other DBs
NCBI-ProteinID:
ACZ22884
UniProt:
D1BC97
LinkDB
All DBs
Position
complement(3308042..3311923)
Genome browser
AA seq
1293 aa
AA seq
DB search
MLDVNVFDELRIGLATADDIRTWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDL
APKDLEKVIYFAAYMVTSVDVDGRQEDLPNLQNEIDLEKKEITDRRDNDIETRARRLESD
LAELEAEGARADARRKVRDSAEREMAQLRKRADAELERLEQVWDKFKNLKVADLEGDEML
YRALQDRYGNYFEGSMGAAAIQKRLQDFDLDAEATSLREIIRSGKGQKKTRALKRLKVVN
AFLTTTNSPTGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSISDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAK
SAVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIHLHPLVCAAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPSDGRPVTMPSQDMIIGLYHLTSDKVDPVGEGR
AFSSVSEAVMAFDQGSLDLNAVVTIRMEGLVPPVSGFEAPEGWVEGEPILFTTTLGRALF
NELLPVTYPYVNSVVDKKRLSQIVNELAETYPKVEVAESLDALKAAGFRWATRSGITISI
SDVATPKAEKAAILEAHESRALKVQQQFDKGLITDDERRQELIEIWTQATDKVAKAMQEN
FPARNTVYRMVGSGARGNWMQVRQIAGMRGLVANPKGEIIPRPIKSNYREGLSVLEYFIA
THGARKGLADTALRTADSGYLTRRLVDVSQDVIVREDDCGTERGLTLPVGEDLGDGRLVR
HGKVEQSIYSRTLAASVEVDGTVLGAAGEDVGDVLIDALLAAGVTTLKVRSVLTCESQVG
TCAKCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQGLPRV
TELFEARTPKGEAPIAEYSGKITIDDSERTRRIVLTPEDGSEEIAYPVTKRSRLLVEDGQ
DVVVGTQLVQGAVDPKKVLRILGPRATQKHLVDEVQEVYGSQGVDIHDKHIEVIVRQMLR
RVTVLDSGDSILLPGELAERGRFENANRQAVAEGGQPASGRPELMGITKASLATDSWLSA
ASFQETTRVLTEAAMSGRRDPLLGLKENVILGKLIPAGTGLPRYHEVTVEPTEEAKAELY
PSFGYDEIDFPALGMGSGEAIPLEDIDFGPDFR
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgtcaatgtcttcgacgagctgcgtatcggactggccacggcagacgacatc
cgcacctggtcgcatggcgaggtcaagaagcctgagaccatcaactaccgcaccctcaag
cccgagaaggacggactcttctgcgagaagatcttcggcccgacccgggactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacgcgctcgaaggtgcgtcgcgagcgcatgggccacatcgagctcgccgctccc
gtcacccacatctggttcttcaagggcgtgccgtcccgcctcggctacctcctcgacctc
gcgccgaaggacctcgagaaggtcatctacttcgccgcgtacatggtgacgtcggtcgac
gtcgacggccgccaggaagacctcccgaacctccagaacgagatcgacctggagaagaag
gagatcaccgaccgtcgcgacaacgacatcgagacgcgcgcacgccgcctcgagtccgac
ctcgccgagctcgaggccgagggcgcccgcgccgacgcacgccgcaaggtgcgcgactcc
gccgagcgcgagatggctcagctgcgcaagcgtgctgacgccgagctcgagcgcctcgag
caggtctgggacaagttcaagaacctcaaggtcgccgacctcgagggcgacgagatgctc
taccgcgccctccaggaccgctacggcaactacttcgagggttcgatgggtgccgccgcg
atccagaagcggctgcaggacttcgacctcgacgccgaggcgacctcgctgcgcgagatc
atccgctcgggcaagggccagaagaagacccgtgccctcaagcgcctcaaggtcgtcaac
gccttcctcacgacgaccaactcgccgaccggcatggtcctcgacgccgtcccggtcatc
ccgccggacctgcgtccgatggtgcagctcgacggtggacgtttcgcgacgtccgacctc
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctgaagcgcctcctcgacctc
ggtgcgcccgagatcatcgtcaacaacgagaagcgcatgctccaggaggccgtggactcg
ctgttcgacaacggtcgtcgtggacgtccggtcaccgggccgggcaaccgcccgctcaag
tcgatctccgacatgctcaagggcaagcagggtcgattccgccagaacctcctcggcaag
cgtgtcgactactcgggccgttcggtcatcgtggtcggtccgcagctcaagctgcaccag
tgcggcctgccgaagcagatggcgctcgagctcttcaagcccttcgtcatgaagcgcctc
gtcgacctcaaccacgcgcagaacatcaagagcgccaagcgcatggtcgagcgcgcgaag
tctgccgtgtgggacgtcctcgaagaggtcatcaccgagcaccccgtgctgctcaaccgt
gcacccaccctgcaccgcctgggcatccaggccttcgagcctcagctcgtcgagggcaag
gccatccacctgcacccgctcgtctgcgcggcgttcaacgccgacttcgacggtgaccag
atggctgtccacctgccgctgtccgccgaggcccaggccgaggcgcgcatcctcatgctc
tcgagcaacaacatcctcaagccgtccgacggtcgcccggtcaccatgccctcgcaggac
atgatcatcggtctgtaccacctgacgagcgacaaggtcgacccggtcggcgagggacgc
gcgttcagctccgtctccgaggccgtcatggccttcgaccagggcagcctggacctcaac
gcggtcgtcacgatccgcatggagggcctcgtcccgccggtctccggcttcgaggcgccc
gagggctgggtcgagggtgagcccatcctcttcaccacgacgctcggccgtgcgctcttc
aacgagctgctgccggtcacgtacccgtacgtcaactccgtcgtcgacaagaagcgcctg
tcgcagatcgtcaacgagctcgccgagacctaccccaaggtcgaggtcgcggagtcgctc
gacgcgctcaaggccgccggcttccgctgggccacacgctcgggcatcaccatctcgatc
tccgacgtcgcgacgccgaaggccgagaaggccgccatcctcgaggcgcacgagtcccgt
gccctcaaggtgcagcagcagttcgacaagggactgatcaccgacgacgagcgccgccag
gagctcatcgagatctggacccaggccaccgacaaggtcgcgaaggcgatgcaggagaac
ttccctgcacgcaacacggtctaccggatggtcggctcgggtgctcgtggtaactggatg
caggtccgtcagatcgccggtatgcgtggtctcgtggcgaacccgaagggtgagatcatc
cctcgcccgatcaagtccaactaccgtgagggcctctcggtcctcgagtacttcatcgcg
acgcacggtgctcgtaagggtctggccgacacggctctgcgtaccgcagactcgggctac
ctgacccgtcgtctcgtcgacgtctcgcaggacgtcatcgtccgcgaggacgactgcggg
accgagcgcggtctcacgctccccgtgggcgaggacctcggcgacggtcgcctcgtgcgg
cacggcaaggtcgagcagagcatctactcgcgcaccctggccgcctcggtcgaggtcgac
gggaccgtgctcggcgctgctggtgaggacgtcggcgacgtgctcatcgacgcgctgctc
gctgccggcgtcacgacgctcaaggtgcgctccgtgctcacctgcgagtcgcaggtcggc
acgtgcgccaagtgctacggccgctcgctcgcgaccggcaagctcgtcgacatcggcgag
gccgtcggcatcatcgcagcccagtcgatcggtgagcccggtacgcagctgaccatgcgt
accttccacaccggtggtgtggcgtcggccgacgacatcacgcagggtctgccgcgtgtc
accgagctgttcgaggcccgtacccccaagggtgaggccccgatcgcggagtactccggc
aagatcacgatcgacgactccgagcgcacccgtcggatcgtcctcacccccgaggacggc
tctgaggagatcgcctacccggtgaccaagcgctcgcgcctgctcgtcgaggacggccag
gacgtcgtcgtcggcacccagctcgtccagggtgctgtcgacccgaagaaggtcctgcgc
atcctcggaccgcgtgccacccagaagcacctggtggacgaggtccaggaggtctacggg
tcgcagggtgtggacatccacgacaagcacatcgaggtcatcgtgcggcagatgctgcgt
cgcgtgaccgtgctcgactcgggtgactccatcctcctcccgggtgagctcgccgagcgt
ggtcgcttcgagaacgcgaaccgtcaggctgtcgccgagggcggtcagccggcctcgggt
cgtccggagctcatgggcatcacgaaggcgtcgctcgcgacggactcgtggctgtccgcg
gcctcgttccaggagaccacccgcgtgctcacggaggccgccatgagcggtcgccgcgac
ccgctgctgggcctcaaggagaacgtcatcctcggaaagctcatccctgccggtacgggc
ctgccccgctaccacgaggtcacggtcgagcccaccgaagaggcgaaggccgagctgtac
ccgagcttcgggtacgacgagatcgacttcccggcgctcggcatgggctccggcgaggcc
atcccgctcgaggacatcgacttcggcccggacttccgctga
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