Sanguibacter keddieii: Sked_31430
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Entry
Sked_31430 CDS
T01214
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
ske
Sanguibacter keddieii
Pathway
ske03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ske00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Sked_31430
09124 Replication and repair
03420 Nucleotide excision repair
Sked_31430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ske03021
]
Sked_31430
03400 DNA repair and recombination proteins [BR:
ske03400
]
Sked_31430
Enzymes [BR:
ske01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sked_31430
Transcription machinery [BR:
ske03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Sked_31430
DNA repair and recombination proteins [BR:
ske03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Sked_31430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
ACZ23040
UniProt:
D1BD36
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All DBs
Position
3495578..3497254
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AA seq
558 aa
AA seq
DB search
MPDGPLIVQSDKSLLLEVDHPQSDAARRAIAPFAELERAPEHVHTYRLTPLGLWNARAAG
HDAEQVVNVLLAFSRYAVPHALLVDVAETMSRYGRLTLSKHPVHGLVLETTDRAVLAEVM
KSKRTAGLFGERIDDDTVQVHASERGHLKQVLLKLGWPAEDLAGYVDGEKHPIDLSPTDP
GHDDKPWEMRPYQQQAVDGFWHGGSGVVVLPCGAGKTIVGAGAMARSGTTTLILVTNTVS
ARQWRDELVRRTTLTEDEIGEYSGARKEIRPVTIATYQVLTTKRKGVYTHLELLDARDWG
LVVYDEVHLLPAPIFRMTADLQARRRLGLTATLVREDGREDEVFSLIGPKRYDAPWKDIE
AQGYIAPADCVEVRLTLPERDRMLYATAEPEDKYRLAACAPGKNAIVERLVALHEGDPTL
VIGQYIDQLEELGEHLGAPVITGATTVKERQRLFDAFRTGEITKLVVSKVANFSIDLPEA
SVAIQVSGSFGSRQEEAQRLGRVMRPKADGRTAHFYAVVARDTVDQEFAAHRQRFLAEQG
YAYRIVDADDIEHVRDDH
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcctgacggcccactcatcgtccagagcgacaagtccctgctgctcgaggtcgaccac
ccgcagtcggacgccgcgcggcgagcgatcgccccgttcgcggagctcgagcgcgccccc
gagcacgtgcacacctaccggctgaccccgctgggtctgtggaacgcccgggcggcgggg
cacgacgccgagcaggtcgtcaacgtgctgctggccttcagccgctacgcggtgccgcac
gcgctcctggtcgacgtggccgagaccatgtcgcgctacggccgtctgaccctgtcgaag
cacccggtgcacggcctggtcctggagacgacggaccgcgctgtcctcgccgaggtgatg
aagtcgaagcggacggccgggctcttcggcgagcgcatcgacgacgacacggtccaggtg
cacgcctcggagcgcggtcacctcaagcaggtgctgctcaagctcgggtggccggccgag
gacctcgcgggctacgtcgacggcgagaagcacccgatcgacctcagcccgacggacccg
gggcacgacgacaagccctgggagatgcgtccgtaccagcagcaggcggtcgacggcttc
tggcacggcggcagcggtgtcgtggtgctgccctgcggcgccggcaagaccatcgtcggt
gccggtgccatggcacggtcgggcaccacgacgctgatcctcgtgaccaacacggtgtcg
gcgcggcagtggcgcgacgagctggtgcgccgcacgaccctcaccgaggacgagatcggc
gagtactccggtgcccgcaaggagatccgcccggtgaccatcgcgacctaccaggtgctc
accaccaagcggaagggcgtctacacgcacctcgagctgctcgacgcccgcgactggggt
ctcgtggtctacgacgaggtccacctgctacccgcgccgatcttccgcatgacggcggac
ctccaggcgcgccgccggctcggactgacggcgacgctcgtgcgcgaggacggccgcgag
gacgaggtgttctccctcatcgggcccaagcgctacgacgccccgtggaaggacatcgag
gcgcagggctacatcgcgcccgcggactgcgtcgaggtgcggctcacgctgcccgagcgc
gaccgcatgctctacgcgacggccgagccggaggacaagtaccggctggcggcgtgcgcg
ccgggcaagaacgccatcgtcgagcgtctcgtcgcgctgcacgagggcgacccgacgctc
gtcatcgggcagtacatcgaccagctcgaggagctcggcgagcacctgggcgctccggtc
atcaccggggcgacgacggtcaaggagcggcagcggttgttcgacgccttccggaccggc
gagatcaccaagctcgtggtgagcaaggtcgcgaacttctcgatcgacctgcccgaggcc
tcggtggccatccaggtgtcggggtccttcgggtcccggcaggaggaggcccagcgcctc
ggccgcgtcatgcgccccaaggccgacgggcgcaccgcgcacttctacgcggtggtcgcg
cgcgacaccgtcgaccaggagttcgccgcgcaccgccagcgcttcctcgccgagcagggc
tacgcgtaccgcatcgtcgacgcggacgacatcgagcacgtccgcgacgaccactga
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