Sanguibacter keddieii: Sked_32680
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Entry
Sked_32680 CDS
T01214
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ske
Sanguibacter keddieii
Brite
KEGG Orthology (KO) [BR:
ske00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ske03032
]
Sked_32680
03400 DNA repair and recombination proteins [BR:
ske03400
]
Sked_32680
Enzymes [BR:
ske01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Sked_32680
DNA replication proteins [BR:
ske03032
]
Prokaryotic type
DNA Topoisomerases
Sked_32680
DNA repair and recombination proteins [BR:
ske03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Sked_32680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
MacB_PCD
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
ACZ23163
UniProt:
D1BDU2
LinkDB
All DBs
Position
complement(3636631..3639519)
Genome browser
AA seq
962 aa
AA seq
DB search
MSAGRKLVIVESPAKARTIAGYLGDDYEVEASVGHIRDLPQPSEMPADMKKGPFGKFAVN
VDGGFEPYYEVYADKKKKVAELKRALKNADELYLATDEDREGEAIAWHLLQELKPKVPVH
RMVFHEITREAINRALENTREIDGRMVDAQETRRILDRLYGYEVSPVLWRKVRQGLSAGR
VQSVATRLVVERERERMAFVTANYWDVSGDFTTQDGPDAGEWFSAKLVQVDGARVASGRD
FTDAGELKSPQGVVHLDEQAAHALVTALADQPAAVRSLETKPYTRRPAAPFTTSTLQQEA
SRKLRMSSRQAMRTAQTLYENGYITYMRTDSPSLSTQATDAARRQAAELYGPEYVPSSPR
VYASKAKGAQEAHEAIRPAGDSFRTPAQVSREISGDQFKLYELIWKRTVASQMGDARGST
ASVRLGVAGTLPAGAPSIGDAGPGSQTDAVFAASGTVITFRGFLAAYEEGRDTDRYDSAD
STGTSKKAEGDARLPQMAEGDAMTSRELSADGHSTSAPPRFTEASLVKALEERGIGRPST
YASTISTIQDRGYVLSRGQALVPSWLAFAVIRLLEEHFGQLIDYDFTAEMEADLDAIAAG
DKERVAWLTQFYFGDDTEGSDEGLRQLVEDLGDIDAREINSVPIGEGITLRVGRYGPYIE
DTAAEVAEGENPPRASVPDEVAPDELTVAKARELLETQGDGDIELGVDPSTQTTIVAKAG
RYGPYVTELLPEPEFEEGLSAAALKRAKAALPKPRTASLLKTQSLQTITLDDALQLLSLP
RVVGVDPESGTEITAQNGRYGPYLKRGTDSRTLPSEESMFTVTLAEALEIYAQPKRGRGA
TAAPPLKELGEDPTSQKPIVIKDGRFGAYVTDGTTNRTLPKDITIEAITHEQAVELLAEK
RAKGPVKKTTRATAAKKTPAKKTPAKATAAKSTTARSTTTKTATAKKAPAKKAPAKKAAP
EA
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atgtccgctggtcgcaagctcgtcatcgtggagtcgcccgccaaggcacgcacgatcgcc
ggttacctcggcgacgactacgaggtcgaggcgagcgtcgggcacatccgtgacctcccg
cagccctcggagatgcctgcggacatgaagaagggccccttcggcaagttcgcggtcaac
gtcgacggtgggttcgagccgtactacgaggtgtacgcggacaagaagaagaaggtcgcc
gagctcaagcgggccctgaagaacgccgacgagctctacctcgcgaccgatgaggaccgc
gagggcgaggccatcgcgtggcacctgctccaggagctcaagcccaaggtccccgtgcac
cgcatggtgttccacgagatcacccgcgaggcgatcaaccgggctctggagaacacccgc
gagatcgacggtcgcatggtcgacgcgcaggagacccgccgcatcctcgaccgcctctac
ggctacgaggtgtccccggtgctgtggcgcaaggtccgccagggcctgtctgctggtcgt
gtgcagtcggtcgcgacccgcctggtcgtcgagcgcgagcgcgagcgcatggccttcgtc
accgcgaactactgggacgtgtcgggcgacttcaccacgcaggacggcccggacgccggc
gagtggttctccgcgaagctggtccaggtggacggcgcacgcgtggcctccggccgcgac
ttcacggacgccggcgagctgaagagcccccagggagtggtgcatctcgacgagcaggcc
gcgcacgccctcgtcaccgccctggccgaccagccggccgcggtccgcagcctcgagacg
aagccgtacacgcgtcgcccggccgcaccgttcaccacctcgacgctccagcaggaggcg
tcgcgcaagctccgcatgtcctctcggcaggcgatgcgcaccgcgcagaccctgtacgag
aacgggtacatcacctacatgcgtacggactccccgtcgctgtcgacccaggccaccgac
gccgcgcgccgccaggccgccgagctctacggccccgagtacgtgccgtcgtcgccccgc
gtctacgcctcgaaggccaagggtgcgcaggaggcccacgaggccatccgccccgcaggg
gactcgttccgcacgccggcccaggtgtcccgcgagatcagcggcgaccagttcaagctc
tacgagctcatctggaagcgcacggtcgcgtcgcagatgggcgacgcccgcggctcgacg
gcctcggtccgtctcggtgtcgccgggaccctccccgcgggcgcaccgtcgatcggcgac
gccggccctggctcccagaccgacgccgtcttcgcggcctcgggcacggtcatcaccttc
cgcggcttcctcgccgcctacgaggagggtcgcgacaccgaccgctacgactccgccgac
tccacggggacctccaagaaggccgagggcgacgcacggctgccccagatggccgagggc
gacgcgatgacctcgcgcgagctctccgcagacgggcactcgacctcggcgccgccgcgc
ttcacggaggccagcctcgtcaaggcgctcgaggagcgcggcatcggccgcccctcgacg
tacgcgtcgacgatctcgaccatccaggaccgcggctacgtgctgagccgcggccaggcc
ctcgtgcccagctggctggccttcgcggtgatccggctgctcgaggagcacttcggccag
ctcatcgactacgacttcaccgccgagatggaggcggacctcgacgcgatcgccgcgggc
gacaaggagcgcgtcgcctggttgacgcagttctacttcggcgacgacaccgagggctct
gacgaggggctgcgccagctcgtcgaggacctcggcgacatcgacgcccgcgagatcaac
tcggtgccgatcggcgagggcatcacgctgcgcgtcggtcgctacggcccgtacatcgag
gacaccgccgccgaggtcgcggagggcgagaacccgccccgtgcctccgtgcccgacgag
gtcgcgcccgacgagctcacggtcgccaaggcgcgcgagctcctcgagacccagggcgac
ggcgacatcgagctcggggtggacccgtcgacccagacgaccatcgtcgccaaggcgggc
cgctacggcccgtacgtgaccgagctcctgcccgagcccgagttcgaggagggcctgtcg
gccgccgcgctcaagcgcgccaaggccgccctgcccaagccgcgcacggcgtcgctgctc
aagacgcagtcgctccagacgatcaccctcgacgacgcgctccagctgctctcgctgccg
cgcgtggtcggcgtcgaccccgagtccgggaccgagatcaccgcgcagaacggccgctac
ggcccgtacctcaagcgcggcacggactccaggacgctgccgagcgaggagtcgatgttc
acggtcaccctcgccgaggccctcgagatctacgcgcagcccaagcgtgggcgcggggcc
accgccgcgccgccgctcaaggagctcggcgaggaccccacgtcgcagaagccgatcgtc
atcaaggacggtcgcttcggcgcctacgtgaccgacgggacgaccaaccggacgctcccc
aaggacatcaccatcgaggcgatcacccacgagcaggccgtcgagctgctcgcggagaag
cgcgccaagggcccggtcaagaagaccacccgtgcgaccgccgccaagaagaccccggcc
aagaagacgcccgccaaggccacggcagcgaagtcgacgacggccaggtcgacgaccacg
aagacggcgaccgccaagaaggccccggccaagaaggcccccgcgaagaaggcagcgccc
gaggcctga
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