Streptomyces koelreuteriae: KJK29_11000
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Entry
KJK29_11000 CDS
T09603
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
skg
Streptomyces koelreuteriae
Pathway
skg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
skg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KJK29_11000 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
skg03021
]
KJK29_11000 (rho)
03019 Messenger RNA biogenesis [BR:
skg03019
]
KJK29_11000 (rho)
Transcription machinery [BR:
skg03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
KJK29_11000 (rho)
Messenger RNA biogenesis [BR:
skg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KJK29_11000 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QWB23081
UniProt:
A0ABX8FPM3
LinkDB
All DBs
Position
complement(2533562..2535613)
Genome browser
AA seq
683 aa
AA seq
DB search
MSDTTDLMGARVEETAAAPATDASAPASGAGSRRRRGTGLEGMVLAELQQVASGLGIKGT
ARMRKSQLIEVIKEAQASGGAAPAAKAADAPAETKPKRRATSRTRTGDNAEKAEKKADAK
QASEAPAEKADKADKAVAQQQIEIPGQPASDDAPSERRRRRATADAGSPASAAETVAAEA
KNDAKAEAPAQQSQQQSQNDAKSDSGDGGEGRRRDRRDRGRDRDRGDRGDRGGRGNKGDD
QQGGQRGQQQNQQQGGGGGRQDRGQQQQDDDDFEGGRRGRRGRYRDRRGRRGRDDVQEPQ
ITEDDVLIPVAGILDILDNYAFIRTSGYLPGPNDVYVSLAQVRKNGLRKGDHITGAVRQP
KEGERREKFNALVRLDSVNGMAPESGRGRPEFNKLTPLYPQDRLRLETDPGVLTTRIIDL
VSPIGKGQRGLIVAPPKTGKTMIMQAIANAITHNNPECHLMVVLVDERPEEVTDMQRSVK
GEVISSTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPASGRI
LSGGVDSTALYPPKRFFGAARNIEDGGSLTILATALVDTGSRMDEVIFEEFKGTGNAELK
LDRKLADKRIFPAVDVDASGTRKEEILLGSDELAITWKLRRVLHALDQQQAIELLLDKMK
QTKSNAEFLMQIQKTTPMPGNGD
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacaccaccgatctgatgggcgcacgtgtcgaggagaccgctgccgcgcccgcc
acggacgcctccgcgcctgcatccggtgccggctcccggcggcgccgcggtaccggcctc
gagggcatggtgctggccgagctgcagcaggtcgcatccggcctcggcatcaagggcacg
gcgcgcatgcgcaagagccagctgatcgaggtcatcaaggaggcgcaggcgtccggcggc
gccgctccggccgcgaaggcggccgacgcccccgccgagaccaagccgaagcgccgcgcc
acctcccggacccgtacgggggacaacgccgagaaggcggagaagaaggcggacgctaag
caggcctccgaggcccccgccgagaaggccgacaaggccgacaaggccgtcgcccagcag
cagatcgagatcccgggccagcccgccagcgacgacgcgccttccgagcgccgtcgtcgc
cgggccaccgccgacgccggatccccggcttccgctgccgagacggtcgccgccgaggcg
aagaacgacgccaaggccgaggctccggcgcagcagtcgcagcagcagtcccagaacgac
gccaagtccgactcgggcgacggcggcgagggccgccgccgcgaccgccgtgaccgcggc
cgggaccgtgaccgcggtgaccgcggtgaccgcggtggccggggcaacaagggcgacgac
cagcagggcggccagcgcggccagcagcagaaccagcagcagggcggcggtggcggtcgt
caggaccgtggccagcagcagcaggacgacgacgacttcgagggcggccgtcgcggccgt
cgcgggcgctaccgcgaccgccggggccgtcgcggccgcgacgacgtgcaggagccgcag
atcaccgaggacgacgtcctgatccccgtcgcgggcatcctggacatcctcgacaactac
gccttcatccgcacctccggctacctgcccggcccgaacgacgtgtacgtctccctcgcc
caggtccgtaagaacggcctgcgcaagggtgaccacatcaccggtgccgtgcgtcagccg
aaggagggcgagcgccgcgagaagttcaacgcgctggtccgtctggactccgtcaacggc
atggcgcccgaatccgggcgcggtcggccggagttcaacaagctgacgccgctttacccc
caggaccggctccgtctggagaccgacccgggcgtgctgaccacccgcatcatcgacctg
gtctcgccgatcggtaagggccagcgcggtctgatcgtggccccgccgaagaccggcaag
accatgatcatgcaggccatcgccaacgcgatcacgcacaacaaccccgagtgccacctg
atggtcgtcctggtcgacgagcgtccggaagaggtcaccgacatgcagcggtcggtcaag
ggcgaggtcatctcctcgaccttcgaccgcccggccgaggaccacacgacggtcgccgag
ctcgccatcgagcgcgccaagcgtctcgtcgagctgggccacgacgtggtcgtgctgctc
gactcgatcacgcgtctgggccgtgcgtacaacctcgccgccccggcctccggccgcatc
ctgtccggtggtgtcgactcgacggccctgtacccgccgaagcgcttcttcggtgcggcc
cgcaacatcgaggacggcggctcgctgaccatcctcgccaccgccctggtggacaccggg
tcccgcatggacgaggtgatcttcgaggagttcaagggcaccggcaacgcggagctcaag
ctcgaccggaagctcgccgacaagcgcatcttcccggcggtggacgtggacgcgtccggc
acccgtaaggaagagatcctgctcggcagcgacgagctcgccatcacctggaagctgcgc
cgtgtgctgcacgcgctcgaccagcagcaggcgatcgagctgctcctggacaagatgaag
cagaccaagtcgaacgccgagttcctgatgcagatccagaagacgacgccgatgccgggc
aacggcgactag
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