Streptomyces koelreuteriae: KJK29_28600
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Entry
KJK29_28600 CDS
T09603
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
skg
Streptomyces koelreuteriae
Pathway
skg03030
DNA replication
skg03430
Mismatch repair
skg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
skg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KJK29_28600 (dnaE)
03430 Mismatch repair
KJK29_28600 (dnaE)
03440 Homologous recombination
KJK29_28600 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
skg03032
]
KJK29_28600 (dnaE)
03400 DNA repair and recombination proteins [BR:
skg03400
]
KJK29_28600 (dnaE)
Enzymes [BR:
skg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KJK29_28600 (dnaE)
DNA replication proteins [BR:
skg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KJK29_28600 (dnaE)
DNA repair and recombination proteins [BR:
skg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KJK29_28600 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Tsr1_G-like
MetW
Motif
Other DBs
NCBI-ProteinID:
QWB28478
LinkDB
All DBs
Position
6353565..6357107
Genome browser
AA seq
1180 aa
AA seq
DB search
MSKPPFTHLHVHTQYSLLDGAARLKDMFNACNEMGMSHIAMSDHGNLHGAYDFFHTAQKA
GVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTMWAVNSTGLHNIFRL
SSDAYAEGWLQKWPRMDKETIAQWSEGIVASTGCPSGEVQTRLRLGHFDEALKAAADYQD
IFGKDRYFLELMDHGIEIERRVRDGLLEISKKLGIPPLVTNDSHYTYSHEASAHDALLCI
QTGKNLSDPDRFRFDGTGYYLKSTDEMYAIDSSDAWQEGCANTRLIAEMVDTTGMFEKRD
LMPKFDIPEGYTEVTWFKEEVRRGMERRFPGGVPEDRQKQAEYEMDTIISMGFPGYFLVV
ADFIMWAKKQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPERVSMPDVDI
DFDERRRVEVIRYVTEKYGADKVAMIGTYGTIKAKNAIKDSARVLGYPYAMGDRLTKAMP
ADVLGKGINLDGITNPEHPRYSEAGEIRGMYENEPDVKKVIDTAKGVEGLVRQMGVHAAG
VIMSSETITDHVPVWVRHTDKVTITQWDYPSCESLGLLKMDFLGLRNLTIMDDAVKMVKS
NKGVDIDLLSLPLDDPTTFELLQRGDTLGVFQFDGGPMRSLLRLMKPDNFEDISAVSALY
RPGPMGMNSHTNYALRKNGQQEITPIHKELEEPLKEVLDVTHGLIVYQEQVQKAAQIIAG
YSLGEADILRRVMGKKKPEELAKNFVLFQEGARKKGFSDEAIQALWDVLVPFAGYAFNKA
HSAAYGLVSYWTAYLKANHPAEYMAALLTSVKDDKDKSAVYLNECRRMGIKVLPPDVNES
MSNFAAQGDDVILFGLSAVRNVGTNVVESIIRCRKAKGKYVSFPDYLDKVEAVVCNKRTT
ESLIKAGAFDAMNHTRKGLTAHYEPMIDNVVAVKRKEAEGQFDLFGGMGEAAETSEPGFG
LDVEFSPDEWDKTYLLAQEREMLGLYVSDHPLFGLEHILSDKADAGISQLTGGDYSDGSV
VTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFPATYQLVSTQLVEDAVVFVKGR
LDKREDVPRLVAMELMVPDLSNAGTNAPVILTIPATRVTPPLVSRLGEVLSHHKGDSEVR
IKLQGPTKTTVLRLDRHRVKPDPALFGDLKVLLGPACLAG
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
gtgtcaaagccgccgttcacgcacctgcacgtccacacccagtactcgctgctggacggt
gccgcgcggctgaaggacatgttcaacgcgtgcaacgagatgggcatgtcgcacatcgcc
atgtccgaccacggcaacctccacggggcgtacgacttcttccacaccgcgcagaaggcc
ggggtcacgccgatcatcggcatcgaggcgtacgtcgcgcccgagtcccgccgcaacaag
cgcaagatccagtggggccagccgcaccagaagcgggacgacgtctccggttccggtgga
tacacccacaagacgatgtgggcggtgaacagcaccggcctgcacaacatcttccggctg
tcctccgacgcgtacgcggagggctggctccagaagtggccccggatggacaaggagacc
atcgcccagtggtccgagggcatcgtcgcctccaccggctgcccctccggcgaggtccag
acccggctgcgcctcggccacttcgacgaggccctcaaggccgccgccgactaccaggac
atcttcggcaaggaccgctacttcctggagctgatggaccacggcatcgagatcgagcgc
cgggtccgcgacggcctgctggagatctccaagaagctcggcatccccccgctggtcacc
aacgactcgcactacacctactcgcacgaggcgtccgcccacgacgccctgctgtgcatc
cagaccggcaagaacctctccgaccccgaccgcttccggttcgacggcaccggctactac
ctgaagtccaccgacgagatgtacgccatcgactcctcggacgcctggcaggagggctgc
gccaacacccggctgatcgccgagatggtcgacaccacgggcatgttcgagaagcgcgac
ctcatgcccaagttcgacatcccggaggggtacaccgaggtcacctggttcaaggaggag
gtgcgccgcggcatggagcgccgcttccccggcggcgtccccgaggaccgccagaagcag
gcggagtacgagatggacaccatcatctcgatgggcttcccgggctacttcctcgtggtc
gccgacttcatcatgtgggccaagaagcagggcatcgcggtcggccccggccgaggctcc
gcggccggctcgatcgtcgcctacgcgatgggcatcaccgacctcgaccccatcccgcac
ggcctgatcttcgagcggttcctcaaccccgagcgcgtctccatgcccgatgtcgacatc
gacttcgacgagcgccggcgcgtcgaggtgatccggtacgtgacggagaagtacggcgcc
gacaaggtcgccatgatcggcacctacggcaccatcaaggccaagaacgcgatcaaggac
tccgcgcgcgtgctgggctacccgtacgcgatgggcgaccgcctcaccaaggccatgccc
gccgacgtcctcggcaagggcatcaacctcgacggcatcaccaaccccgagcacccccgc
tactcggaggcgggcgagatccgggggatgtacgagaacgagccggacgtgaagaaggtc
atcgacaccgccaagggcgtcgagggcctggtccgccagatgggtgtgcacgccgccggc
gtgatcatgtccagcgagacgatcaccgaccacgtccccgtctgggtcaggcacacggac
aaggtcaccatcacccagtgggactacccgagctgcgagtcgctcggcctgctgaagatg
gacttcctcggcctgcgcaacctcacgatcatggacgacgccgtcaagatggtgaagtcc
aacaagggggtcgacatcgacctcctgagcctcccgctcgacgaccccacgaccttcgag
ctgctccagcgcggcgacaccctcggcgtcttccagttcgacggcggcccgatgcgctcc
ctgctccggctgatgaagccggacaacttcgaagacatctccgccgtgtcggccctgtac
cgcccgggcccgatgggcatgaactcccacacgaactacgcccttcgaaagaacggccag
caggagatcacgcccatccacaaggagctcgaagagcccctcaaggaggtcctggacgtc
acccacggcctgatcgtgtaccaggagcaggtgcagaaggccgcccagatcatcgccggg
tactcgctcggcgaggccgacatcctccgccgcgtcatgggcaagaagaagcccgaggaa
ctggcgaagaacttcgtcctcttccaggagggcgcccgcaagaagggcttcagcgacgag
gccatccaggccctgtgggacgtgctggtccccttcgccggttacgcgttcaacaaggcc
cactccgccgcgtacggcctggtctcgtactggacggcgtacctcaaggcgaaccacccc
gccgagtacatggccgccctgctcacctcggtgaaggacgacaaggacaagtcggccgtc
tacctcaacgagtgccgccgcatgggcatcaaggtgctcccgccggacgtcaacgagtcg
atgtccaacttcgcggcccagggcgacgacgtgatcctcttcggcctctccgccgtccgc
aacgtcggcacgaacgtcgtcgagtcgatcatcaggtgccgcaaggccaaggggaagtac
gtctccttcccggactacctcgacaaggtggaggcggtggtctgcaacaagcgcaccacc
gaatcgctgatcaaggccggcgccttcgacgccatgaaccacacccgcaagggcctgacc
gcgcactacgaaccgatgatcgacaacgtggtcgcggtcaagcgcaaggaggccgaggga
cagttcgacctcttcggcggcatgggcgaggcggccgagaccagcgagccgggcttcggg
ctcgacgtggagttctcccccgacgagtgggacaagacctatctgctcgcccaggagcgg
gagatgctcggtctgtacgtctccgaccacccgctgttcggcctggagcacatcctgtcc
gacaaggccgacgcgggcatctcccagctcaccggaggtgactactccgatggctccgtg
gtgaccatcggcggcatcatctcgggcctccagcgcaagatgaccaagcagggcaacgcc
tgggccatcgccaccgtcgaggacctcgccggctcgatcgagtgcatgttcttccccgcg
acctaccagctcgtctcgacccaactggtcgaggacgccgtggtgttcgtcaagggccgt
ctcgacaagcgggaggacgtgccgcggctcgtcgcgatggagctgatggtgccggacctg
tcgaacgcgggcaccaacgcgcccgtgatcctcaccatcccggccacccgggtcaccccg
ccgctggtcagccgcctcggcgaggtcctcagccaccacaagggcgacagcgaggtccgg
atcaagctccaggggccgaccaagaccaccgtgctgcgcctggaccggcaccgggtgaag
ccggacccggcgctcttcggtgacctgaaggtgctcctcgggccggcctgcctggccggc
tga
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