Streptomyces koelreuteriae: KJK29_36690
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Entry
KJK29_36690 CDS
T09603
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
skg
Streptomyces koelreuteriae
Pathway
skg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
skg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KJK29_36690 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
skg03021
]
KJK29_36690 (rho)
03019 Messenger RNA biogenesis [BR:
skg03019
]
KJK29_36690 (rho)
Transcription machinery [BR:
skg03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
KJK29_36690 (rho)
Messenger RNA biogenesis [BR:
skg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KJK29_36690 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
AAA_25
DUF3086
Spore_III_AA
AAA
Motif
Other DBs
NCBI-ProteinID:
QWB27697
UniProt:
A0ABX8G391
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All DBs
Position
complement(8164383..8165525)
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AA seq
380 aa
AA seq
DB search
MTTTLENPPVQQQAQAQTATGVLDIDAAGKGHLREAGLLPTPADLAVSPALIRRYGLRKG
DLVEGVRGDRRGLTDVVRVDGREPGEVRGRRHFRDLTPLHPHERLRLEHPAAGPTGRVVD
LISPVGKGQRGLLVAPPKTGKTVILQQLAAAVAGNHPESRLMVLLLDERPEEVTDMRRGV
RGEVYASTFDRSAKQHIALAELVIERAKRRVEAGEDVVVLLDSLTRLCRAHNNAAASGGR
IMTGGVDASALIGPKRFFGAARAAEEGGSLTILATALVETGSRADDFYFEELKSTGNMEL
RLSRDPASRRVFPAVDITPSGTRREELLLPPAELAAVHGLRRVLQGRDGQGGLETLLERL
RETPDNATFLRRIQPTLPSG
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccacactcgaaaacccacccgtccagcagcaggcccaggcccagaccgcgacc
ggcgtcctcgacatcgacgcggccgggaaggggcatctgcgcgaggcgggcctcctgccc
acgcccgccgacctcgcggtctcccccgcgctgatccgccggtacggcctgcgcaagggc
gacctcgtcgagggcgtgcgcggcgaccggcgcggcctgaccgacgtcgtgcgggtcgac
ggccgtgagccgggcgaagtgcgcggccggcgacacttccgggacctgacaccgctgcat
ccgcacgagcggctgcgtctggagcacccggccgccggaccgaccggacgggtcgtcgac
ctgatctcaccggtcggcaagggccagcgcggactcctcgtggccccgcccaagaccggc
aagaccgtcatcctgcagcagctcgcggccgccgtcgccggcaaccatcccgagagccgg
ctgatggtgctgctgctcgacgagcggcccgaggaggtcaccgacatgcggcgcggtgtg
cggggcgaggtctacgcctcgaccttcgaccgcagcgccaagcagcacatcgcgctcgcc
gagctcgtgatcgaacgggccaagcggcgcgtcgaggccggtgaggacgtcgtcgtcctc
ctcgactcgctgacccggctgtgccgggcgcacaacaacgcggccgcgtccggtggccgc
atcatgaccgggggcgtcgacgcgtccgccctgatcggccccaagcggttcttcggcgcc
gcccgggccgccgaggagggcggctctctcacgatcctcgccaccgccctggtggagacc
ggctcccgggccgacgacttctacttcgaggagctgaagagcaccggcaacatggagctg
cgtctgagccgcgacccggcgtcccgccgcgtgttcccggccgtcgacatcacaccctcc
ggcacccgccgtgaggaactcctgctgcccccggccgagttggcggccgtgcacggcctg
cggcgcgtgttgcagggccgggacggccagggtggtctggagacccttctggagcggctg
cgcgagacaccggacaacgcgacgttcctgcggcgcatccagccgaccctgccctcgggc
tga
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