Shewanella khirikhana: STH12_00009
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Entry
STH12_00009 CDS
T06711
Symbol
hupB_1
Name
(GenBank) DNA-binding protein HU-beta
KO
K03530
DNA-binding protein HU-beta
Organism
skh
Shewanella khirikhana
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
skh03032
]
STH12_00009 (hupB_1)
03036 Chromosome and associated proteins [BR:
skh03036
]
STH12_00009 (hupB_1)
03400 DNA repair and recombination proteins [BR:
skh03400
]
STH12_00009 (hupB_1)
DNA replication proteins [BR:
skh03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
STH12_00009 (hupB_1)
Chromosome and associated proteins [BR:
skh03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
STH12_00009 (hupB_1)
DNA repair and recombination proteins [BR:
skh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
STH12_00009 (hupB_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
Motif
Other DBs
NCBI-ProteinID:
AZQ09162
LinkDB
All DBs
Position
complement(9018..9290)
Genome browser
AA seq
90 aa
AA seq
DB search
MNRTELIAKIAESADLTKAEAGRALKSFEEAVTAAMKEGDKISIVGFGSFETSTRAERTG
RNPQTGKEIKIPAATIPKFKAGKALRDSVN
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
atgaacagaactgaacttatcgccaagattgccgagagcgccgacctgaccaaagccgag
gctggccgtgcactgaaatcctttgaagaagctgtgactgccgccatgaaagaaggcgac
aagatttctatcgtaggtttcggttcattcgaaaccagcacccgcgccgagcgcaccggt
cgtaacccacagaccggcaaggaaatcaaaatccctgcggcaaccattccaaagttcaag
gccggtaaggccctgcgtgacagcgttaactaa
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