Shewanella khirikhana: STH12_00038
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Entry
STH12_00038 CDS
T06711
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
skh
Shewanella khirikhana
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
skh03021
]
STH12_00038 (rapA)
Transcription machinery [BR:
skh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
STH12_00038 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_34
Motif
Other DBs
NCBI-ProteinID:
AZQ09191
LinkDB
All DBs
Position
complement(34973..37876)
Genome browser
AA seq
967 aa
AA seq
DB search
MSFAIGQRWISDTESELGLGTVVQVEGRMVTVLFPATGENRMFAMAEAPLTRVIYNPGDT
IDSAEGWSMTVDKLEEMNGIVFYFGKRTDDGEETMLRETLLEHNIRFNKPQDRLYAGQID
RIERFGVRYKSQLLRHKLATSDMLGLQGPRVGLIPHQLWIAHEVGRRHAPRVLLADEVGL
GKTIEAGLIIHQQLMTGRAERILVIVPDTLRHQWLVEMLRRFNLRFAVFDEDRCVEAFAD
HDNPFYTEQLVICSLELLRKKRRLEQALDADWDLMVVDEAHHLEWSEDEPSRAYQVVEAL
AAVVPGVLLLTATPDQLGHQSHFARLRLLDPDRFYDYQAFLNEEKGYQAVAEAADALARG
IKLSDDAINGLTELLSEKDIAPAIRQIQAENLDEELRQAARDELLQELLDRHGTGRVLFR
NSRASVKGFPKRIFHSYGFDMPEQYATAMRVNAMMGGSKTAEAKVAQVLSPERIYQQFDD
NNASWWKFDPRVDWLIDFLKAHRSKKVLVIASRAETALALEEALRTREGIQATVFHEGMS
IIERDKAGAYFAQEEGGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGRLDR
IGQRHDVQIHLPFLKNTAQEQLMNWYHQGLCAFELTCPGGHLLFSEFKGRLLAMLAGEME
DEAELMADTQARYKALKEAMEQGRDKLLELNSHGGARAEALAAKLADADEDTDLIASVLR
LWDVIGLDQDDRGENCIVLHPTDHMMFPTYPGLSEDGITVTFDRNTALSRDDIALITLEH
PLVQTGLDLITGSDTGTTCVALLKNKALPAGTLFLELMYLAETSAPKASQVQRYLPPTPI
RVLLDKSGNNLSDKVDYDSFDKQLSGVNRHIASKLVNASQTMLHPLFANGEAVAQEALAK
LTGDARSRMETQLTAELSRLESLKAVNPNIRDEELEHLKGQITELSGYLGNTQLKLDAIR
LVLVSHA
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcgcgattgggcagcgctggataagcgatacagagtcggagttgggtttgggc
acagtggtgcaggttgaagggcgcatggtgactgtgctgttccccgctaccggcgaaaac
cgtatgtttgccatggccgaagcccccctgacccgggtaatttacaaccccggcgatacc
attgattcggccgaaggctggagcatgacggtagacaagctcgaagagatgaacggcata
gtgttctacttcggcaagcgtaccgacgatggcgaagaaaccatgctcagggaaaccctg
ctcgagcacaatattcgtttcaacaagccccaggatcgcctctacgccggtcaaatcgat
cgtatcgagcgctttggtgtgcgctacaagtcgcagcttttgcgccacaagctggccacc
tccgacatgctgggtctgcaaggccccagggttggccttattccgcaccagctgtggatt
gcccatgaagtgggtcgccgtcacgccccccgcgtattgctcgccgacgaagtaggtctg
ggtaagaccatcgaagcgggcctgattattcaccagcagctgatgaccggccgcgccgag
cgtattctggtgatagtgcccgacaccctgcgccaccagtggctggtggaaatgctgcgc
cgctttaacctgcgctttgcggtatttgatgaagaccgctgcgtggaagcctttgccgat
cacgacaaccccttctacacagagcagctggttatctgttcgctggagctgctgcgtaag
aaacgccgtctggagcaggcgctggatgccgactgggatctgatggtggtggatgaagcc
caccatctggagtggagcgaagacgagccaagccgcgcctatcaggtagtggaagccctg
gctgccgtggtgcccggggtactgctgctgaccgcaacgccggatcagctgggtcaccag
agccacttcgcccgtttgcgcctcttggatccggatcgtttctacgactatcaagccttc
ctcaatgaagaaaaaggctatcaggccgtggccgaagccgccgatgccctcgcccgtggc
atcaagctttccgacgacgccatcaacggcctgaccgagctgttgtctgaaaaagacata
gccccggccatccgccaaattcaggccgaaaacctcgatgaagaactgcgtcaggccgcc
cgcgacgaactgctgcaggagctgctcgatcgccacggcaccggccgggtgctgttccgc
aacagccgcgcctcggtaaaaggcttccccaaacgtattttccacagctacggctttgat
atgcctgagcaatacgccaccgccatgcgggtaaacgccatgatgggcggcagcaagacc
gccgaagccaaggtagcccaggtgctgagcccagaacgtatttatcagcagtttgatgat
aacaacgccagttggtggaagttcgacccccgagtcgactggcttatcgactttttgaaa
gcccaccgctccaagaaggtgctggtcatcgccagccgagccgaaaccgcactggcgctg
gaagaagcgctgcgcacccgcgaaggcattcaggccacagtattccacgaaggcatgtcc
attatcgagcgtgacaaggccggtgcttactttgcccaggaagaaggcggcgcccaggcg
ctgatctgctccgaaatcggctcagaaggccgtaacttccagtttgccagccatctggtg
ctgttcgacctgccgctgaatccggatctgctggagcagcgcatcggccgtctggaccgt
atcggccagcgtcatgatgtgcaaattcacctgccattcctgaaaaacactgctcaggaa
cagctgatgaactggtaccaccagggtctgtgtgccttcgagctgacctgccccggcggc
catctgctgttcagcgagttcaagggccgtctgctggccatgctcgccggtgagatggaa
gatgaagctgagctgatggccgacacccaggcgcgctacaaggcgcttaaggaagccatg
gaacagggccgcgacaagctgctggaactcaacagccatggcggcgcccgcgccgaagcc
ctggcggccaaacttgccgatgccgatgaagacacagatctgattgcctctgtgctgcgg
ctgtgggatgtgattggtctggatcaggacgatcgcggcgaaaactgcattgtgctgcac
cccaccgatcatatgatgttccccacctatccaggcctcagcgaagatggcattaccgtc
accttcgatcgcaacacggcgctgtcccgtgacgatattgccctgatcaccctggagcac
ccgctggtacagaccgggttggatctcatcacaggctctgacacaggcaccacctgtgtg
gcgctgctcaagaacaaggccctgcccgccggcaccctgttcctggagctgatgtacctc
gccgaaacctcggcgcccaaggccagccaggtgcagcgctatctgccgcctacacctatc
cgggtgctgctggacaagagcggcaacaatctgtcagacaaggtcgattacgacagcttc
gacaagcagctttccggagtgaaccgccatatcgccagcaagctggtgaacgcgtctcaa
accatgctgcacccactgtttgccaatggtgaagccgtggcgcaagaagcgctggccaaa
ctcaccggggatgcccgcagccgcatggaaacccagctgacggcggaactgtcacgtctg
gagtcactcaaagcggtcaaccccaacatccgtgacgaagagctggagcacctcaaaggc
cagattaccgagctgtcaggctaccttggcaacacccagttgaagttggatgccattcgt
ctggtgctggtaagccacgcctga
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